Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00623 ATGAGAACAGGAAGCTGCGCCGTGCAACAGGGTCTAACCCCAGAAGCTGCGAGCATAGTGAAGCAAGCAGTGACACTTGCGAAGCGTCGTGGCCACGCGCAAGTGACACCCCTCCACGTGGCAAACACCATGCTCTCTATCACAAACGGGCTTCTGAGAACCGCGTGTCTCCAATCCCACTCTCACCCTCTTCAGTGCAAGGCCTTGGAGCTTTGCTTCAACGTTGCGCTGAATCGCTTACCAGCTTCAACTTCTTCGAGTCCCATGTTGCAGGGCTCTCACCACCACCACTCTCACTCGTGTCCCTCTATCTCAAACGCTTTGGTGGCTgcgttcaaacgcgctcaagcgcaccaacgacgtggatccatcgagaatcagcaacaacctctcttggcagtgaagatagagctcgagcaactcattatttcgatcttggatgaccctagtgttagcagggtcatgcgagaggctggattcaccagcactcaggtgaaaagcaacgttgaacaagcggtttcttTGGAAATATGTTCGCAGAATAATGGTAGTAATATTAAGGCAAAGGAAAACAATAGTGGTGGAGAGAAAGGGTTGGTGTTGGATGCCATTAGGGGTGAGGATGTTGCTAGTGTTATTGATAATTTGGGGAGTGAGAGAAAGAAAAGTGTTGTGATTGTGGGAGAGTGTGTTACTAGTCTTGAGGGTGTAGTTAGAGGAGTGATGGAAAAGGTTGACAAAGGGGATGTTGGTGAGTGTCTTAGGGGAGTCAAGTTCATCTCTCTTTCTCTTTCTTCTTTTGCAAGTGTTTCCAGAGTGGAGGTTGAGCAAAAGGTGGAGGAGCTTAGGGGTCTTGTGAAGGCAAGTGAACATAGCAAAGGGTATGTTTTATATTTGGGGGATCTCAAATGGGTGTTTGATTTTAGGGCTCGTGGATCGCAAGGGAGAGCGTGTTACTGTCCTGTGGATCACATGGTGGTGGAGATTGGGAAGATGGTGAGTGGAGTTGAAGAGAATGGTGGAAGGTTTTGGGTGATGGGTGTTGCAACTTTTCAAGCTTACATGAGATGCAAAAATGGCCATCCATCGTTGGAAACTCTTTGGGGTCTCCATCCTATTACTATTCCTGCAGGAAGCTTGCGCTTGAGTCTCATCACTGACAGTGGTCTACAACACCAGCCCACAAACAAGAAAGCTGACAACAGAACTAGCTGGCTCTTACTCGAAGGAGTGGGGGATGATCACAAACAACAACCTTGCTTCGCGGAACCTTCTACCAAGAATGAGACCGAAGTTCGAAGCTTGCAAAGCAGTACTTGTAATAGTGACTCCTCAAGTCCAACCCTCCCTGCATGGCTCCAACAGTACAAAAATGAGAATAAAGGAATCACCTATAATGATCAGAACTGTGTTCCAGTGGGAGAGCTTTGCAAAAAGTGGAATCCAATGTGTTGTTCAATCCAAAAGCAACCTTATCCTTCGGAAAAAACCCTCACATTATCTTCGGTTTCACCCTCTTCATCAACCTCAGGCTTCTCATACGAACATCAACACCCTAATGTGCACCAAACCCATCAAGAGTGGCACGTGGCAGAACCCAAAGACTCATTGAGCAACCACCATTTCTGGAACACTAGCAATGGTTGCAACCCCAACGAACCCACTTTGAGAGTGTACATTCCAGAAAACAATGAAACCACTAAGCAACCATTCTCATCATCACCCAACCCAAGTTCCAACCCTAATTCCGCTTCTTCCAGTGACGTCATGGAAGTGGAGCACGTGTGCAAGTTCAAAGAGCTAAGCTCAGAGAACCTGAAAACACTGTGCAACGCTTTGGAGAAAAAAGTGCCGTGGCAGAAAGATATAATACCAGAAATCGCAACCACCGTTTTGCAATGCCGTTCTGGTATAGTGAGAAGAAAAGGGAAAGTGCGAAACAGTGAAGTGAAAGAAGAAACGTGGTTGTTTTTCCAAGGTGTTGACGTGGAAGCCAAAGAGAAAATAGCACGAGAACTGGCTCGGCTTGTTTTCGGGTCCCACAACGACGTCGTTTCCGTTGCACTTAGCAGTTTCGCGTCAACAAGAGCGGATTCAACTGAGGATTGTAGCAGGAACAAAAGATCAAGAGAAGAAACAAGTTGCAGTTACATTGAGAGGTTCGCTGAAGCTATCTCTTGTAACCCTCATAGGGTTTTTCTCGTTGAAGATATAGAGCAAGCGGATTATTGTTCTCAAATTGGTTTCAAAAGGGCCATTGAGAGAGGAAGAGTTGTGGATTCAAACCGTGAAGAGGTTTCGCTTTGTGACGCAATCATCATTCTGAGCTGCGAAAGCTTCAGTTCAAGGTCAAGGGCTTGTTCTCCTTCGGTCAAACAAAAATCGTTGACCGAAGACAATGTTGCTACTTTGGAGGAGACAAGCCCTTGTGTTTCTTTGGATTTGAATATTTCCATTGATGATGAAAACGAGGTTGAGGATCGCTCAGTGGATGAAATCGGGCTTCTTGAATCCGTAGACAGAAAGATTATCTTCAACTATCAGGAATTGTGA 2553 0.4254 MRTGSCAVQQGLTPEAASIVKQAVTLAKRRGHAQVTPLHVANTMLSITNGLLRTACLQSHSHPLQCKALELCFNVALNRLPASTSSSPMLQGSHHHHSHSCPSISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLIISILDDPSVSRVMREAGFTSTQVKSNVEQAVSLEICSQNNGSNIKAKENNSGGEKGLVLDAIRGEDVASVIDNLGSERKKSVVIVGECVTSLEGVVRGVMEKVDKGDVGECLRGVKFISLSLSSFASVSRVEVEQKVEELRGLVKASEHSKGYVLYLGDLKWVFDFRARGSQGRACYCPVDHMVVEIGKMVSGVEENGGRFWVMGVATFQAYMRCKNGHPSLETLWGLHPITIPAGSLRLSLITDSGLQHQPTNKKADNRTSWLLLEGVGDDHKQQPCFAEPSTKNETEVRSLQSSTCNSDSSSPTLPAWLQQYKNENKGITYNDQNCVPVGELCKKWNPMCCSIQKQPYPSEKTLTLSSVSPSSSTSGFSYEHQHPNVHQTHQEWHVAEPKDSLSNHHFWNTSNGCNPNEPTLRVYIPENNETTKQPFSSSPNPSSNPNSASSSDVMEVEHVCKFKELSSENLKTLCNALEKKVPWQKDIIPEIATTVLQCRSGIVRRKGKVRNSEVKEETWLFFQGVDVEAKEKIARELARLVFGSHNDVVSVALSSFASTRADSTEDCSRNKRSREETSCSYIERFAEAISCNPHRVFLVEDIEQADYCSQIGFKRAIERGRVVDSNREEVSLCDAIIILSCESFSSRSRACSPSVKQKSLTEDNVATLEETSPCVSLDLNISIDDENEVEDRSVDEIGLLESVDRKIIFNYQEL 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00623 850 MobiDBLite consensus disorder prediction 565 587 - -
Cca02g00623 850 Gene3D - 202 372 IPR027417 -
Cca02g00623 850 SUPERFAMILY Double Clp-N motif 12 169 IPR036628 -
Cca02g00623 850 Gene3D - 584 820 IPR027417 -
Cca02g00623 850 PANTHER PROTEIN SMAX1-LIKE 3 1 849 - -
Cca02g00623 850 ProSiteProfiles Clp repeat (R) domain profile. 8 176 IPR004176 -
Cca02g00623 850 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 849 - -
Cca02g00623 850 Pfam Clp amino terminal domain, pathogenicity island component 23 50 IPR004176 -
Cca02g00623 850 Pfam Clp amino terminal domain, pathogenicity island component 136 173 IPR004176 -
Cca02g00623 850 Gene3D - 9 174 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00623 Cca-Chr2 13878581 13882854 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00623 - - var:108320189 1434.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00623 02 13878581 13882854 Cca02g00623 02 13878581 13882854 ECH
Cca02g00623 02 13878581 13882854 Cca05g01260 05 30238802 30244399 ECH
Cca02g00623 02 13878581 13882854 Cca01g00682 01 8956210 8969622 ECH