Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00616 ATGTCCACCACCAGAACAAAACTCCCTCTCAACACCCTCTCCGTCAGCCTGGGCTGCGCCAGCTGCAGGCGCCCCAAGCTCCTGCGCCGCCTTTTCCACCCCAAGCCCCGCCCCAAGAGGCCCAACGCCTACCGCGCCTGGGCCGAGGAGCGCGACGAcaccgccaccagcaccaccaccaccaccaacacctccgccgccaccTTCTCCCCCTCGTCCTGGGAGTGCGCCAAGACCGTGAGCGGCTTCGGGAGAGCCGGGAGCGAGGGCGTGGCGGTGGAGAAGGACTCCGACGACCCTTACTTGGACTTCCGCCACTCCATGCTGCAGATGATTCTGGAGAACGAGATTTACTCCAAACACGACCTCAGAGAGCTTCTTAACTGTTTTCTTCAGCTTAATTCACCCCACCACCACGGCGTCATCGTTAGAGCCTTCACCGAGATCTGGAACGGCGTcttctccgtcacctcttcctcctcctccgccgccgcctTCCGCCGTAAGTCACGTGACTTCTAG 522 0.5134 MSTTRTKLPLNTLSVSLGCASCRRPKLLRRLFHPKPRPKRPNAYRAWAEERDDTATSTTTTTNTSAATFSPSSWECAKTVSGFGRAGSEGVAVEKDSDDPYLDFRHSMLQMILENEIYSKHDLRELLNCFLQLNSPHHHGVIVRAFTEIWNGVFSVTSSSSSAAAFRRKSRDF 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00616 173 PANTHER TRANSCRIPTION REPRESSOR OFP6-LIKE 1 163 - -
Cca02g00616 173 Pfam Transcriptional repressor, ovate 97 153 IPR006458 -
Cca02g00616 173 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 1 163 IPR038933 GO:0045892
Cca02g00616 173 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 91 151 IPR006458 -
Cca02g00616 173 MobiDBLite consensus disorder prediction 33 65 - -
Cca02g00616 173 ProSiteProfiles OVATE domain profile. 93 152 IPR006458 -
Cca02g00616 173 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00616 Cca-Chr2 13795333 13796245 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Cca02g00616 Ovate 2.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00616 - - pvu:PHAVU_007G269800g 211.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00616 02 13795333 13796245 Cca02g00616 02 13795333 13796245 ECH