Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00614 ATGAAGTTTCTTTCTTTTCTAAAACCTAGCAATGCAAGATCCTCCTCTTCATCATCATGGGCCTGGCCATCCTGCCACCAGCCCAAAACACTCTCATTCAGAGTAATTaccaccaccactaccaccacAGTTGTCAATTCAAAAGTCACCAATGTTGTTGAAACGTTCGCGACAGAAACCTCGGAGTCTTTCTTCACGGAGACTCCAAACTCCGCGAGCTTCTCGACAGCAACTTCGGAAGCGGCCTGGGATCCGATCGAGACCGTGATTCGCGGTCTGCGGTCGGACCGGCTCTTCTTCGAACCGGACGAGACGAGCTCCATATTCAAACCCTCTCCGACGCACTCACCGTTCGAAAACAGCGTGGTTTTGTCGATGGACTCGCTGGACCCGTACGCAGACTTCCGCAGGTCCATGGAGGAGATGGTGGAGACGCACGGCGTGGGAGACTGGGAGAGCCTCGAGGAGCTTCTGTGCTGGTACCTAAAAGTCAACGGAAAAAACAACCACGAGTATATTGTGGGTGCGTTCGTTGACTTGTTGTTCGGGCTCGCGTTTTCTTCTTCGGCGTGTTTGGAACTGCATTCTCCTCCCTCTTCTCCGGTGTCGTTTTACAGTTCTCTCTCTTCTTGCAGCTCTCGCTGCGCGTATTGTTTGGAGGGTGAGGATGAGGAAGAGGGGGTTGGTGCTGCTAGTTCGTCTTTTTCCTTGGCGCAAGCGAAGGGAGAGATTATAGCTGTAGATGAAGCATCGTCTTCTTCGTATTCTAACACCTGA 777 0.5045 MKFLSFLKPSNARSSSSSSWAWPSCHQPKTLSFRVITTTTTTTVVNSKVTNVVETFATETSESFFTETPNSASFSTATSEAAWDPIETVIRGLRSDRLFFEPDETSSIFKPSPTHSPFENSVVLSMDSLDPYADFRRSMEEMVETHGVGDWESLEELLCWYLKVNGKNNHEYIVGAFVDLLFGLAFSSSACLELHSPPSSPVSFYSSLSSCSSRCAYCLEGEDEEEGVGAASSSFSLAQAKGEIIAVDEASSSSYSNT 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00614 258 Pfam Transcriptional repressor, ovate 128 184 IPR006458 -
Cca02g00614 258 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 123 184 IPR006458 -
Cca02g00614 258 ProSiteProfiles OVATE domain profile. 124 183 IPR006458 -
Cca02g00614 258 PANTHER OVATE TRANSCRIPTIONAL REPRESSOR 1 215 - -
Cca02g00614 258 MobiDBLite consensus disorder prediction 1 21 - -
Cca02g00614 258 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 1 215 IPR038933 GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00614 Cca-Chr2 13701037 13702046 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Cca02g00614 Ovate 3.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00614 - - gmx:100816044 241.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00614 02 13701037 13702046 Cca02g02694 02 48337455 48338438 ECH
Cca02g00614 02 13701037 13702046 Cca02g00614 02 13701037 13702046 ECH