Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00600 ATGGGGCGCGTTCGCACGAAGACGGTGAAGAAGTCGTCGCGGCAAGTGATAGAGAGGTACTATTCGCGCATGACACTTGATTTCCACACGAACAAGAAGGTTCTGGAAGAGGTGGCAATCATTCCCTCCAAGAGGCTGCGGAACAAGATCGCGGGATTCTCCACGCACCTCATGAAGCGGATTCAGAAGGGTCCCGTTAGAGGAATATCGCTCAAGCTGCAGGAGGAGGAGAGGGAGCGTCGCATGGACTTCGTCCCCGATGTCTCCGCCATCGCCACCGACCACATCGAGGTCGACAAGGAGACCCTCGACATGCTCGCCGCCCTCGGAATGTCCGAGATTCCCGGCGTTGTCCAGGTCGATcccgtccccgttgccgcgccgctccccttcgcccgtGGCGCCGGGAGGAGGTTTTAA 420 0.5286 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIATDHIEVDKETLDMLAALGMSEIPGVVQVDPVPVAAPLPFARGAGRRF 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00600 139 ProSitePatterns Ribosomal protein S17e signature. 41 56 IPR018273 GO:0003735|GO:0005840|GO:0006412
Cca02g00600 139 SUPERFAMILY Rps17e-like 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
Cca02g00600 139 PANTHER 40S RIBOSOMAL PROTEIN S17 1 138 IPR001210 GO:0003735|GO:0005840|GO:0006412
Cca02g00600 139 Hamap 30S ribosomal protein S17e [rps17e]. 1 63 IPR001210 GO:0003735|GO:0005840|GO:0006412
Cca02g00600 139 Pfam Ribosomal S17 1 120 IPR001210 GO:0003735|GO:0005840|GO:0006412
Cca02g00600 139 PANTHER 40S RIBOSOMAL PROTEIN S17 1 138 - -
Cca02g00600 139 Gene3D - 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00600 Cca-Chr2 13337034 13338416 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00600 1 137 Cytoplasmic Ribosomal Protein Gene Family AT3G10610 82.482 1.28e-79 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00600 K02962 - gmx:100785402 247.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00600 02 13337034 13338416 Cca02g00600 02 13337034 13338416 ECH