Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00598 ATGTCCGTAAACCACTACTCCATGGACCTTCCAGAAACCACACTGTGGTGGCCTCATCaacaggagcaacaacaagaacaagaacaagaacaacaacCCTTCCATGGGAACCTGAACAaggaggaggaggaggaggagtacgaggcgaaggaaacgacgacgacgaagcaggaggaaacggaggaggagaaggaggCCATGTTCGAGAAGCCCTTGACGCCGAGCGACGTGGGGAAGCTCAACCGTCTCGTAATCCCCAAGCAGCACGCCGAGAAGTACTTCCCTCTCGGCGGCGGCGACTCGGCCGAGTGCAAGGGGCTTCTGCTGAGTTTCGAGGACGAGTCGGGCAAGTGCTGGCGGTTCCGCTACTCCTACTGGAACAGCAGCCAGAGCTACGTCCTCACCAAGGGCTGGAGCCGCTACGTCAAGGACAAGCGCCTCGACGCCGGCGACGTCGTTTTGTTCGAGCGACACCGCGCCGACAACCACCGCCTCTTCATCGGCTGGAGGCGCCGCCCCCACGCTGACAACGCCACCGCCCCCGCGCACGTTAGCAGGACGCTGCCCCACGCCACCCCTCCTCCCGCTGTGCCCCTCGACTGGACCAGACCCTCCTTCTATTCTGCGCATCCTTATCCTGCGCATCATCACCCCTTCCCATACCAACATGCAGGTAGAGGGACCCAAGGTCAGAACCAAAGGACGAGCCCGAGTTCAAGGGTACTTAGGCTGTTTGGGGTCAACATGGAATGCCAAGCTGAACATGATTCTGGACCCTCCACACCTCAATGCTCCTACAATAGTAACAACATGCCAACCACACAGGGCACAGATACCcatcatcaccatttctaccatcatcatcatcatcatcaACCTTCTTCCAATCCTTCACCTCACATGGTACGTCACCAACCATACTACTACTAG 930 0.4925 MSVNHYSMDLPETTLWWPHQQEQQQEQEQEQQPFHGNLNKEEEEEEYEAKETTTTKQEETEEEKEAMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGGDSAECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFERHRADNHRLFIGWRRRPHADNATAPAHVSRTLPHATPPPAVPLDWTRPSFYSAHPYPAHHHPFPYQHAGRGTQGQNQRTSPSSRVLRLFGVNMECQAEHDSGPSTPQCSYNSNNMPTTQGTDTHHHHFYHHHHHHQPSSNPSPHMVRHQPYYY 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00598 309 MobiDBLite consensus disorder prediction 254 278 - -
Cca02g00598 309 ProSiteProfiles B3 DNA-binding domain profile. 68 173 IPR003340 GO:0003677
Cca02g00598 309 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 20 279 - -
Cca02g00598 309 MobiDBLite consensus disorder prediction 35 70 - -
Cca02g00598 309 MobiDBLite consensus disorder prediction 252 309 - -
Cca02g00598 309 MobiDBLite consensus disorder prediction 1 70 - -
Cca02g00598 309 Coils Coil 40 60 - -
Cca02g00598 309 Pfam B3 DNA binding domain 68 172 IPR003340 GO:0003677
Cca02g00598 309 SUPERFAMILY DNA-binding pseudobarrel domain 65 173 IPR015300 -
Cca02g00598 309 Gene3D - 56 183 IPR015300 -
Cca02g00598 309 SMART B3_2 68 173 IPR003340 GO:0003677
Cca02g00598 309 CDD B3_DNA 67 163 IPR003340 GO:0003677
Cca02g00598 309 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 20 279 IPR044800 GO:0003700
Cca02g00598 309 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00598 Cca-Chr2 13258326 13260580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00598 1 265 RAV Transcription Factor Family AT5G06250 45.683 4.44e-69 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Cca02g00598 B3 2.5e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00598 - - aprc:113872948 391.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00598 02 13258326 13260580 Cca02g00598 02 13258326 13260580 ECH
Cca03g02553 03 46792412 46793680 Cca02g00598 02 13258326 13260580 PCT