Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00582 ATGCTAGGGAAAAAGATGGTATCATTGAAGAAACTAGCCAGAAAAGTGAAGACTGTTGGTGGAGCTGATCCTGACCCTCCCTACCAAGAATGTTTGCTAAAGGGGTATGAGGAGGAAAAGGAGTCACCCTCTAGCACAACCCCAACTGGTTTTTTTGCACTTTATGTTGGTGAGGAGAGGCAGAGATATGTGGTCCCCACCAGCTACCTTTCTCATCCTCTATTCAAAATTCTGCTAGAAAAGGCATACAATGAATTTGGGTTTGCACAGAGGAATGGCCTGGTGGTTCCATGCAGTGTTTCCACATTTCAGGAGGTTGTGAATGCTATTGAATGTAACAATGGCAAATTTGACTTAGCCAAGATTTTTGAAGATTTTGCTTAA 384 0.4271 MLGKKMVSLKKLARKVKTVGGADPDPPYQECLLKGYEEEKESPSSTTPTGFFALYVGEERQRYVVPTSYLSHPLFKILLEKAYNEFGFAQRNGLVVPCSVSTFQEVVNAIECNNGKFDLAKIFEDFA 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00582 127 Pfam Auxin responsive protein 30 109 IPR003676 GO:0009733
Cca02g00582 127 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 1 126 IPR003676 GO:0009733
Cca02g00582 127 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY 1 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00582 Cca-Chr2 12895047 12896056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00582 43 113 Calmodulin-binding Proteins AT5G20810 52.113 1.23e-21 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00582 K14488 - gmx:100790208 237.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00582 02 12895047 12896056 Cca02g00582 02 12895047 12896056 ECH