Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00578 atgccaatgccaatgccaatgccaatTTCAATGTCACTAACACTATCATCGATTCAACCAAAGCCTCACTCACTCTCTTTCCTCAACTTATCCCTAAACCGCCACAACCACATCCCGCCAAAACCCGCGTCCCTCCGAATCCACAGCGCCGCCAAAGCCCAAACCCTCCAATTCCTGAAACCCTACATCGCGGCCCAACACAGGCCCATCCTCTGCGGCTGGCTCTGCAGCGCCGTCTCCGTCTACTCCCTCTCCGCCCTCCTCAACAGATTCTCCACAATCGCCGCCCTCAGCGCCGTCGACGCCGCCCCCCTCGCCGTGCTCCTCGCCGCGCGCCTCGTCGCCAACTACGCGCAGCACGCGCTCCTCTGGGAAGCCTCGTTGAAGGCTGTGTACGAGCTCCGCGTGGACGTGTTCGACCGCGTTCTCCACAGAGAGGTGGCGTACTTCGAAGGGAACGGCGGCGTGTCCGCCGGAGACATTGCGTACCGAATCACCGCCGCAGCTTCCGACCTCGCCGTTACCTTGTACACTCTTCTCAACACCATAGTACCCAGTACTCTGCAGTTGTCGGCAATGATGATGCAGATGTTAGTTATAAGTCCTGCCCTTTCTTTGATTTCAGCCATGATTATTCCTTGCATGCTGCTAGTTGTTACCTTTCTTGGTCAAGAACTTCGCAAGATATCCAAAGAGGCACATGTTAGCATTGCTGATCTCTCAGCTTATCTAAATGAGGTGCTTCCTGCAATTCTCTTTGTGAAAGCAAACAATGCAGAGTCGTGTGAGAATACCAGGTTTACGAGACTGGCTCTGATGGACTATTCTGCGAAGCTGAAGAAGAAAAAGATGAAAGCATTGATTCCTCAGATAATACAAGCAATTTATTTTGTAGTTCTTGCCATACTTGGTGCTGGTTCGCTGGTGATTTCAAGAGGTTCATTTGATCGCTATAGCTTGGTTTCATTTCTGACATCATTACTTTTCTTGATTCAGCCAATTCAGGACGTAGGAAAAGCTTACAATGAATGGAGGCAGGGAGAACCAGCTGCTGAACGTTTGCTTGCCATGACTAGGTTCAAAAATAAGGTGGTTGAGAAACCAGATGCTGTTGATTTGGACCATGTTACAGGGGACCTGAAATTTTGTGATGTCTCCTTTGGGTATAATAATGACTTGCCTCTTGTTTTAAACGGATTGAATCTTCACATTAGAACTGGTGAGATAGTTGCTATTGTGGGTCCTTCTGGTGGAGGGAAAACAACACTTGTAAAACTGTTGCTTCGGCTTTATGATCCTATATCTGGCTGTATACTTATTGATAACGATAACATCCACAACATTCGGTTGGCAAGTTTGAGAAGACATGTTAGTGTTGTTTCTCAAGATATAACACTTTTTTCAGGTACAGTAGCTGAAAACATTGGCTATAGGGATCTAACAACAAAAATTGACATGGAGAGGGTAAAGCATGCAGCTCAAACTGCTAATGCAGATGAGTTCATTAAAAAGCTTCCAGAAGGATACAAAACCAATATTGGACCAAGGGGCTCAACTTTAAGTGGAGGCCAGAGGCAAAGGCTGGCTATTGCAAGGGCTTTGTATCAAGATTCTTCTATATTAATTCTGGATGAGGCAACTTCCTCCTTGGATAGTAAATCTGAGTTATTAGTGAGACAAGCTGTAGAGCGTTTGATGCAAAATCGTACAGTGCTTGTGATTTCCCATCGCTTGGAGACAGTTATGATGGCAAAACGAGTATTTGTTTTGGATAATGGGAAGCTAAAAGAGCTGCCTCGATCAACTATGTTGGACAGTCAAAAGGACTCATTGCTATCATCTGGGCTTGTTATTTGA 1857 0.4577 MPMPMPMPISMSLTLSSIQPKPHSLSFLNLSLNRHNHIPPKPASLRIHSAAKAQTLQFLKPYIAAQHRPILCGWLCSAVSVYSLSALLNRFSTIAALSAVDAAPLAVLLAARLVANYAQHALLWEASLKAVYELRVDVFDRVLHREVAYFEGNGGVSAGDIAYRITAAASDLAVTLYTLLNTIVPSTLQLSAMMMQMLVISPALSLISAMIIPCMLLVVTFLGQELRKISKEAHVSIADLSAYLNEVLPAILFVKANNAESCENTRFTRLALMDYSAKLKKKKMKALIPQIIQAIYFVVLAILGAGSLVISRGSFDRYSLVSFLTSLLFLIQPIQDVGKAYNEWRQGEPAAERLLAMTRFKNKVVEKPDAVDLDHVTGDLKFCDVSFGYNNDLPLVLNGLNLHIRTGEIVAIVGPSGGGKTTLVKLLLRLYDPISGCILIDNDNIHNIRLASLRRHVSVVSQDITLFSGTVAENIGYRDLTTKIDMERVKHAAQTANADEFIKKLPEGYKTNIGPRGSTLSGGQRQRLAIARALYQDSSILILDEATSSLDSKSELLVRQAVERLMQNRTVLVISHRLETVMMAKRVFVLDNGKLKELPRSTMLDSQKDSLLSSGLVI 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00578 618 PANTHER ABC TRANSPORTER B FAMILY MEMBER 29, CHLOROPLASTIC 45 608 - -
Cca02g00578 618 CDD ABC_6TM_exporters 116 354 - -
Cca02g00578 618 Pfam ABC transporter transmembrane region 105 333 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca02g00578 618 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 380 617 IPR003439 GO:0005524
Cca02g00578 618 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 75 346 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca02g00578 618 Pfam ABC transporter 397 548 IPR003439 GO:0005524
Cca02g00578 618 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 45 608 IPR039421 -
Cca02g00578 618 Gene3D ABC transporter type 1, transmembrane domain 54 359 IPR036640 GO:0005524|GO:0016021
Cca02g00578 618 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 369 600 IPR027417 -
Cca02g00578 618 ProSitePatterns ABC transporters family signature. 520 534 IPR017871 GO:0005524
Cca02g00578 618 SUPERFAMILY ABC transporter transmembrane region 58 358 IPR036640 GO:0005524|GO:0016021
Cca02g00578 618 Gene3D - 370 613 IPR027417 -
Cca02g00578 618 SMART AAA_5 406 594 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00578 Cca-Chr2 12834127 12840080 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00578 370 615 Calmodulin-binding Proteins AT2G36910 44.000 8.76e-54 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00578 K02021 - gmx:100788075 927.932