Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00563 ATGGTGGTGCCTGAGTCCGGTATGAACACCCAAAACGAGGTGGAATCGCCGCTACAATTGGATCAACACAGCAACAAGAACCAATTTCCGTTCTCATCACTGGGAAGACAGAACTCAATATACTCCCTCACCCTCGACGAGTTCCAGCACACGCTATGGGAGAGTGGCAAGAACTTCGGGTCAATGAACATGGACGAGTTTCTCAGCAGCATATGGAATGCGGAAGAGAACCAAGTGATGaacaactccaacgtcgtcatcaacaacaacaacaacaacaacatgaacaacTTGTCGCTAAGTGAAGCTTCCACTGATAAAGGGTTGATAAGGAAGCAACCGAGTTTGCCTCGACAAGGGTCTCTAACACTTCCTGCACCCTTGTGTAGGAAAACAGTGGACGAGGTTTGGTCTGAGATACACAAAGGacaacaagagaataacaacaacaacaaTTGTGGCAGTGTTGGAAATACCAACAATGCTCCAAATACCGAATCTGCCCCTTGCCAACCCACCTTTGGAGAGATGACTTTGGAGGATTTCTTGATCAAAGCTGGGGTAGTAAGGGAACATTGTGCAATGCCACTCCAACCTCAGCCTCATCATCATATGCAGCAGTATGCCATGTATCCAAATGCAATGGGGCCTTCTTTTGTGAGTAGGCCAATGATCGGGATCGGCGGCGGTAGTGGTGGTGGGAATGTGGTTGCACCACGGCCTTATCAGGCCGTGGTGCAGAGTGGTGGTGGTGCAATTGGGGAGCCTTCTGGGTATTCGGCGGCGGCAACAATGCCGCCGCCGGGGGTTTGCTTTGGAGGGAGGGGGGTGAATGGTGGCGGCGGTTATGCGGCGGCGGTGGCGGCGACTAATATGGGAATGGCGGCGCCGGTTAGCCCGGTTTCGCCTGAGGGGATAGGTACTGGTGAGAACTCTGGTGGGCAGTTTGGGGTGGAGATGGTGGTGTTTAGAGGGAGAAAGAGGGTGTTGGATGGTCCTGTGGAGAAGGTGGTGGAGAGAAGGCAGAGGAGGATGATCAAGAACAGAGAATCAGCAGCCAGATCTAGAGCAAGAAAACATGCATACACTGTTGAATTAGAAGCAGAATTGAACCAATTAAAAGAAGAGAACGCCCAACTTAAACTAGCTGTGGCCGATCTTGAGAGGAGAAGAAAGCAACAGAATTTAGAGGAAGTGAATGGATCAGTTCAAACCAACGCTCAGAAGGCCAAAAGGAAATTGGCATCACTGAGAAGGACCCAAAGTTGCCCTTTATGA 1278 0.4789 MVVPESGMNTQNEVESPLQLDQHSNKNQFPFSSLGRQNSIYSLTLDEFQHTLWESGKNFGSMNMDEFLSSIWNAEENQVMNNSNVVINNNNNNNMNNLSLSEASTDKGLIRKQPSLPRQGSLTLPAPLCRKTVDEVWSEIHKGQQENNNNNNCGSVGNTNNAPNTESAPCQPTFGEMTLEDFLIKAGVVREHCAMPLQPQPHHHMQQYAMYPNAMGPSFVSRPMIGIGGGSGGGNVVAPRPYQAVVQSGGGAIGEPSGYSAAATMPPPGVCFGGRGVNGGGGYAAAVAATNMGMAAPVSPVSPEGIGTGENSGGQFGVEMVVFRGRKRVLDGPVEKVVERRQRRMIKNRESAARSRARKHAYTVELEAELNQLKEENAQLKLAVADLERRRKQQNLEEVNGSVQTNAQKAKRKLASLRRTQSCPL 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00563 425 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 343 358 IPR004827 GO:0003700|GO:0006355
Cca02g00563 425 MobiDBLite consensus disorder prediction 142 169 - -
Cca02g00563 425 SMART brlzneu 336 397 IPR004827 GO:0003700|GO:0006355
Cca02g00563 425 CDD bZIP_plant_BZIP46 340 381 - -
Cca02g00563 425 PANTHER ABA RESPONSE ELEMENT-BINDING FACTOR 4 424 IPR029803 GO:0003700|GO:0005634|GO:0009737|GO:0045893
Cca02g00563 425 Coils Coil 359 397 - -
Cca02g00563 425 Pfam bZIP transcription factor 340 392 IPR004827 GO:0003700|GO:0006355
Cca02g00563 425 SUPERFAMILY Leucine zipper domain 340 390 IPR046347 GO:0003700|GO:0006355
Cca02g00563 425 MobiDBLite consensus disorder prediction 397 411 - -
Cca02g00563 425 MobiDBLite consensus disorder prediction 1 31 - -
Cca02g00563 425 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 4 424 IPR043452 GO:0003700|GO:0045893
Cca02g00563 425 Coils Coil 400 420 - -
Cca02g00563 425 MobiDBLite consensus disorder prediction 396 425 - -
Cca02g00563 425 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 338 390 IPR004827 GO:0003700|GO:0006355
Cca02g00563 425 Gene3D - 338 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00563 Cca-Chr2 12353823 12358497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00563 1 394 bZIP Transcription Factor Family AT2G36270 49.537 1.92e-107 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Cca02g00563 bZIP_1 2.1e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00563 K14432 - gmx:100790948 549.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00563 02 12353823 12358497 Cca02g00563 02 12353823 12358497 ECH
Cca03g02516 03 46456520 46458263 Cca02g00563 02 12353823 12358497 PCT