LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca02g00563	ATGGTGGTGCCTGAGTCCGGTATGAACACCCAAAACGAGGTGGAATCGCCGCTACAATTGGATCAACACAGCAACAAGAACCAATTTCCGTTCTCATCACTGGGAAGACAGAACTCAATATACTCCCTCACCCTCGACGAGTTCCAGCACACGCTATGGGAGAGTGGCAAGAACTTCGGGTCAATGAACATGGACGAGTTTCTCAGCAGCATATGGAATGCGGAAGAGAACCAAGTGATGaacaactccaacgtcgtcatcaacaacaacaacaacaacaacatgaacaacTTGTCGCTAAGTGAAGCTTCCACTGATAAAGGGTTGATAAGGAAGCAACCGAGTTTGCCTCGACAAGGGTCTCTAACACTTCCTGCACCCTTGTGTAGGAAAACAGTGGACGAGGTTTGGTCTGAGATACACAAAGGacaacaagagaataacaacaacaacaaTTGTGGCAGTGTTGGAAATACCAACAATGCTCCAAATACCGAATCTGCCCCTTGCCAACCCACCTTTGGAGAGATGACTTTGGAGGATTTCTTGATCAAAGCTGGGGTAGTAAGGGAACATTGTGCAATGCCACTCCAACCTCAGCCTCATCATCATATGCAGCAGTATGCCATGTATCCAAATGCAATGGGGCCTTCTTTTGTGAGTAGGCCAATGATCGGGATCGGCGGCGGTAGTGGTGGTGGGAATGTGGTTGCACCACGGCCTTATCAGGCCGTGGTGCAGAGTGGTGGTGGTGCAATTGGGGAGCCTTCTGGGTATTCGGCGGCGGCAACAATGCCGCCGCCGGGGGTTTGCTTTGGAGGGAGGGGGGTGAATGGTGGCGGCGGTTATGCGGCGGCGGTGGCGGCGACTAATATGGGAATGGCGGCGCCGGTTAGCCCGGTTTCGCCTGAGGGGATAGGTACTGGTGAGAACTCTGGTGGGCAGTTTGGGGTGGAGATGGTGGTGTTTAGAGGGAGAAAGAGGGTGTTGGATGGTCCTGTGGAGAAGGTGGTGGAGAGAAGGCAGAGGAGGATGATCAAGAACAGAGAATCAGCAGCCAGATCTAGAGCAAGAAAACATGCATACACTGTTGAATTAGAAGCAGAATTGAACCAATTAAAAGAAGAGAACGCCCAACTTAAACTAGCTGTGGCCGATCTTGAGAGGAGAAGAAAGCAACAGAATTTAGAGGAAGTGAATGGATCAGTTCAAACCAACGCTCAGAAGGCCAAAAGGAAATTGGCATCACTGAGAAGGACCCAAAGTTGCCCTTTATGA	1278	0.4789	MVVPESGMNTQNEVESPLQLDQHSNKNQFPFSSLGRQNSIYSLTLDEFQHTLWESGKNFGSMNMDEFLSSIWNAEENQVMNNSNVVINNNNNNNMNNLSLSEASTDKGLIRKQPSLPRQGSLTLPAPLCRKTVDEVWSEIHKGQQENNNNNNCGSVGNTNNAPNTESAPCQPTFGEMTLEDFLIKAGVVREHCAMPLQPQPHHHMQQYAMYPNAMGPSFVSRPMIGIGGGSGGGNVVAPRPYQAVVQSGGGAIGEPSGYSAAATMPPPGVCFGGRGVNGGGGYAAAVAATNMGMAAPVSPVSPEGIGTGENSGGQFGVEMVVFRGRKRVLDGPVEKVVERRQRRMIKNRESAARSRARKHAYTVELEAELNQLKEENAQLKLAVADLERRRKQQNLEEVNGSVQTNAQKAKRKLASLRRTQSCPL	425

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Cca02g00563	425	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	343	358	IPR004827	GO:0003700\|GO:0006355
Cca02g00563	425	MobiDBLite	consensus disorder prediction	142	169	-	-
Cca02g00563	425	SMART	brlzneu	336	397	IPR004827	GO:0003700\|GO:0006355
Cca02g00563	425	CDD	bZIP_plant_BZIP46	340	381	-	-
Cca02g00563	425	PANTHER	ABA RESPONSE ELEMENT-BINDING FACTOR	4	424	IPR029803	GO:0003700\|GO:0005634\|GO:0009737\|GO:0045893
Cca02g00563	425	Coils	Coil	359	397	-	-
Cca02g00563	425	Pfam	bZIP transcription factor	340	392	IPR004827	GO:0003700\|GO:0006355
Cca02g00563	425	SUPERFAMILY	Leucine zipper domain	340	390	IPR046347	GO:0003700\|GO:0006355
Cca02g00563	425	MobiDBLite	consensus disorder prediction	397	411	-	-
Cca02g00563	425	MobiDBLite	consensus disorder prediction	1	31	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca02g00563	Cca-Chr2	12353823	12358497	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca02g00563	1	394	bZIP Transcription Factor Family	AT2G36270	49.537	1.92e-107	323

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Cca02g00563		bZIP_1	2.1e-10	CL0018

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca02g00563	K14432		-	gmx:100790948	549.666

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca02g00563	02	12353823	12358497	Cca02g00563	02	12353823	12358497	ECH
	Cca03g02516	03	46456520	46458263	Cca02g00563	02	12353823	12358497	PCT

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