Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00550 ATGTTTGTTCCTTCCAAACACGCCCTTGGATTTGTGTTAATTCATGGATACGTGTTGAAGGCGTATCATTTTCCGGTGACTGTGACTCTCACGCAGTTTGCCGTTGGGACTGTTATTGTGGCGTTAATGTGGGGTTTGAATCTGTACAAGAGGCTGAAACTCAGTGGTGCTATGCTTGGAGCGATTTTGCTGTTGGCTGCGGTGCATACTTTGGGGAATCTTTTCACTAATATGAGTCTTGGGAAGGTGGCTGTGTCTTTCACTCACACGATCAAGGCCATGGAGCCTTTCTTTTCGGTCGTCCTTTCTGCCATGTTCCTTGGAGAGGACACCCTATTCATTGGTCCAAGACTGAAGGTATTCTCAGAATGGCTACTGAAATACATGGTTTCAGGTAACCTGGAAGCAATATTTCCAGCTGCTGCTTGTGAATATGCTCCACTGGTGGAAGAACTGTGGAGAGATGCAGCCATTCAGGCCACATATAGTAGGAGAAATGAAATAAAAAATTTACCAACAAATGCTAATTATTTTCTAGAGCGAGCTGTTGAAATTTCCAGCATAGATTACGGACCCTTGGACATGGACATCTTGTATTCTGAGGGGATAACCTTATCCAATAGTCTTTCTTCTATGGAATTTTCATTTACTGTGTCAGGCCGTGAAGACTCATTGGACCCTTCATATCAACATGACCCTTCACTCAGCCACACGTCAGAGGTGTTGGACCCGACGGTCCAACTGATGTATCTCGCCAACACTAGCATGTGGAGGTCACGTGCGAAGGCTAGCATGCAAAGGCTGTCGTGTGGAGGTCGCCGCGCGGAGGTGAATGAAGATGGCATGCGGAGGCTTTCGTGTAGAATCTGA 870 0.4632 MFVPSKHALGFVLIHGYVLKAYHFPVTVTLTQFAVGTVIVALMWGLNLYKRLKLSGAMLGAILLLAAVHTLGNLFTNMSLGKVAVSFTHTIKAMEPFFSVVLSAMFLGEDTLFIGPRLKVFSEWLLKYMVSGNLEAIFPAAACEYAPLVEELWRDAAIQATYSRRNEIKNLPTNANYFLERAVEISSIDYGPLDMDILYSEGITLSNSLSSMEFSFTVSGREDSLDPSYQHDPSLSHTSEVLDPTVQLMYLANTSMWRSRAKASMQRLSCGGRRAEVNEDGMRRLSCRI 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00550 289 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 109 236 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cca02g00550 289 Gene3D - 80 201 IPR011025 GO:0007165
Cca02g00550 289 SUPERFAMILY Transducin (alpha subunit), insertion domain 110 200 IPR011025 GO:0007165
Cca02g00550 289 PANTHER EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 2 109 236 - -
Cca02g00550 289 Pfam Triose-phosphate Transporter family 13 111 IPR004853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00550 Cca-Chr2 12050723 12054389 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00550 11 110 Antiporters AT5G33320 75.000 1.61e-43 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00550 - - gmx:100791124 213.772