Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00547 ATGAAAAAATTAAACGGTGCTTACTTTCCTGAGGAGAAACTCTGCAAATGGTTCACTCAATTACTGTTGGAAGTGGAATACCTGCATTCAAATTTTGTTTTACATCGTGACCTAAAGTGTTCCAACATCTTTCTTATCAAGGATCAGGATGTTCGCCTAGGGGATTTTGGGCTTGCTAAGACACTAAAAGTAGATGATTTGGCATCTTCGGTGGTAGTAACTCCTAATTACATGTGCCCTGAACTGCTTGCTGATATTGGGTGCTGTATATACGAGATGGCTGCTCATCGCCCTGCTTTTAAAGCTTTTGTTGTTTGGAGATAA 324 0.4012 MKKLNGAYFPEEKLCKWFTQLLLEVEYLHSNFVLHRDLKCSNIFLIKDQDVRLGDFGLAKTLKVDDLASSVVVTPNYMCPELLADIGCCIYEMAAHRPAFKAFVVWR 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00547 107 Gene3D Transferase(Phosphotransferase) domain 1 1 105 - -
Cca02g00547 107 ProSiteProfiles Protein kinase domain profile. 1 107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00547 107 SUPERFAMILY Protein kinase-like (PK-like) 3 104 IPR011009 -
Cca02g00547 107 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK5 1 103 - -
Cca02g00547 107 ProSitePatterns Serine/Threonine protein kinases active-site signature. 33 45 IPR008271 GO:0004672|GO:0006468
Cca02g00547 107 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 103 - -
Cca02g00547 107 Pfam Protein kinase domain 7 96 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00547 Cca-Chr2 12025609 12029387 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00547 9 100 MAP Kinase Kinase Kinase AT3G06030 39.815 3.58e-16 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Cca02g00547 Pkinase 2.8e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00547 K08857 - gmx:100784761 197.978