Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00544 ATGGCGGAGGAACACCGTTGCGAGGCTCCCGAGGGCCACCGTCTGTGCGCCAACAACTGCGGCCTCTTCGGCAGCTCCGCCACCATGAACCTCTGCTCCAAATGCTACGGCGCCATCCGCTTGAAGGAGCAACAGGAAGCCTCCACCACCAAATCCACCATCGAAACCGCGCTCTCCTCCTCCGTGGCGGAGCCGCCGCTGTCCGCGACGCCTCCCGCCGTGGAAGCCGCGCCTCcggcggacgtggcagtcgcggtggcggtggcTTGGAGTTCTTCTCCGTCCGGTTGGGTTGAACCGAACCGGTGTGCGAGGTGTCGGAAGCGCGTGGGATTGACCGGGTTTAAGTGCAGGTGCGGGGTGACGTTCTGTGGGAGGCACAGGTACCCGGAGAAGCACGCCTGCGGGTTCGATTTCAAGACGGTGGGAAGAGAGGAGATTGCTCGCGCCAACCCTGTCATCAAAGCGGAGAAGCTGCAGAGGATTTGA 489 0.589 MAEEHRCEAPEGHRLCANNCGLFGSSATMNLCSKCYGAIRLKEQQEASTTKSTIETALSSSVAEPPLSATPPAVEAAPPADVAVAVAVAWSSSPSGWVEPNRCARCRKRVGLTGFKCRCGVTFCGRHRYPEKHACGFDFKTVGREEIARANPVIKAEKLQRI 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00544 162 SUPERFAMILY AN1-like Zinc finger 98 157 IPR035896 -
Cca02g00544 162 Pfam AN1-like Zinc finger 103 139 IPR000058 GO:0008270
Cca02g00544 162 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Cca02g00544 162 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 6 1 162 - -
Cca02g00544 162 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Cca02g00544 162 Gene3D - 86 158 IPR035896 -
Cca02g00544 162 Gene3D - 1 63 - -
Cca02g00544 162 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 162 - -
Cca02g00544 162 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 55 - -
Cca02g00544 162 Pfam A20-like zinc finger 14 36 IPR002653 GO:0003677|GO:0008270
Cca02g00544 162 ProSiteProfiles Zinc finger AN1-type profile. 97 143 IPR000058 GO:0008270
Cca02g00544 162 SMART AN1_Zf_4 103 140 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00544 Cca-Chr2 11951578 11952906 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00544 1 162 C2H2 Transcription Factor Family AT3G52800 54.651 2.08e-53 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00544 - - gmx:100813749 227.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00544 02 11951578 11952906 Cca02g00544 02 11951578 11952906 ECH