Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00540 ATGGAATTGGACTCGCACAAGCAACTAGTTTCCCTCTTATGTCTTCCCCTAGTACTTCTACTATTCTCAGGACATATGGGACTGCAAGCTGAGGCTCGCTTGCAACATCATGAGATGAATCATTCTCCGAAAACGTTGTTTGTTTTTGGGGACTCATATGTTGATACCGGGAACACGAGAAAAGATCAACCTGGTTCGTGGAAAAACCCTTATGGCATAACTTTTCCCGGTAAACCAGCCGGTAGATTCTCCGATGGTAGAGTTTTAACCGACTTCATCGCTAAGTATCTGGGACTCAAATCGCCACTACCCTATAAGTTTAGGAAACTGATGCCACAGCATTTGAAAAATGGGATGAATTTTGCATATGGTGGTACCGGTGTCTTCGACACATCCTCCAAAAACCCAAATATGACAATCCAAATCGATTTCTTCAAAGAATTGATCAAAGAAAATGTGTATACCACCTCAGATCTCAGCAACTCAGTGGCCCTTGTCTCCGTTGCTGGAAATGATTACAATTTCTACTTGGCCACAAATGGCTCTTTGGAGGGTTTCCCTTCTTTCATAGCCTCAGTGGTTAATCAAACTGCCACCAACTTGTTACGCATCCAAAGGTTGGGAGTGAGGAAAATTGTTGTGGGTGGTCTACAACCACTTGGATGTCTTCCTTCAACCACAGCCACATCCTCGTTCCAACAATGCAATAGCACCTTCAACGACCTCGTAGTTCTCCACAACAACTTGTTGAACCAAGCCGTGACCAAGTTGAACCAACAAACCAAGGATCACTCCACCTTCATAGTTCTCGACCTCTACGACAGTTTCATGTCAGTGCTTAACCACCCATCCACCAGCAACATAAAGGACCAGTTCAAGCCTTGTTGCGTTGGGTTAAGCAGCCAATATTCTTGTGGGAGCGTGGACGAGAACAATGTTAAGAAATATAGCGTTTGTGATCATCCCACATCAACTTTCTTTTGGGATCTCTTGCACCCAACTCAAGCAGGTTGGCATGCCGTGTATAACAAGTTGCAAACGACGAGTGCCCTTCAACAACTCAGATACTAG 1071 0.4454 MELDSHKQLVSLLCLPLVLLLFSGHMGLQAEARLQHHEMNHSPKTLFVFGDSYVDTGNTRKDQPGSWKNPYGITFPGKPAGRFSDGRVLTDFIAKYLGLKSPLPYKFRKLMPQHLKNGMNFAYGGTGVFDTSSKNPNMTIQIDFFKELIKENVYTTSDLSNSVALVSVAGNDYNFYLATNGSLEGFPSFIASVVNQTATNLLRIQRLGVRKIVVGGLQPLGCLPSTTATSSFQQCNSTFNDLVVLHNNLLNQAVTKLNQQTKDHSTFIVLDLYDSFMSVLNHPSTSNIKDQFKPCCVGLSSQYSCGSVDENNVKKYSVCDHPTSTFFWDLLHPTQAGWHAVYNKLQTTSALQQLRY 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00540 356 CDD SGNH_plant_lipase_like 45 345 IPR035669 -
Cca02g00540 356 Gene3D SGNH hydrolase 32 352 IPR036514 -
Cca02g00540 356 Pfam GDSL-like Lipase/Acylhydrolase 46 344 IPR001087 GO:0016788
Cca02g00540 356 PANTHER OSJNBB0059K02.9 PROTEIN 4 356 - -
Cca02g00540 356 SUPERFAMILY SGNH hydrolase 42 345 - -
Cca02g00540 356 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 4 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00540 Cca-Chr2 11834894 11838858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00540 17 341 Pollen Coat Proteome AT1G75930 29.971 5.13e-33 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00540 - - gmx:100789208 595.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02507 03 46346672 46349723 Cca02g00540 02 11834894 11838858 PCT