Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00531 ATGAAGGTGATCGCCGCGTATTTGTTGGCCGTGCTCGGAGGCAACACCAGCCCCTCCGCCGCTGACATCAAGGAAATCCTTGGCTGTGTTGGAGCAGATGCCAATGATGATAGGATTGAACAATTGTTGTCTGAAATTAAGGGTAGAGATATAGTGGAGGTCATTGCTGCCGGTAGGGAAAAGCTGGCCTCAGTGCctgctggtggtggtggtgctgttgctgttgcggccgctcctggcggtgctgctgccgatggtccagctgctgAGGCAAAGAAAGAGGAAAAAGAGGAGGAGAAAGAAGAATCTGATGATGATATGGGTTTCGGTCTCTTCGATTAA 342 0.3801 MKVIAAYLLAVLGGNTSPSAADIKEILGCVGADANDDRIEQLLSEIKGRDIVEVIAAGREKLASVPAGGGGAVAVAAAPGGAAADGPAAEAKKEEKEEEKEESDDDMGFGLFD 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00531 113 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P2A-LIKE 2 113 - -
Cca02g00531 113 MobiDBLite consensus disorder prediction 99 113 - -
Cca02g00531 113 Hamap 50S ribosomal protein L12 [rpl12]. 2 113 IPR027534 GO:0003735|GO:0005840|GO:0006414
Cca02g00531 113 MobiDBLite consensus disorder prediction 81 113 - -
Cca02g00531 113 CDD Ribosomal_P2 1 113 IPR044076 GO:0002182|GO:0003735|GO:0022625
Cca02g00531 113 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 2 113 IPR044076 GO:0002182|GO:0003735|GO:0022625
Cca02g00531 113 Pfam 60s Acidic ribosomal protein 17 112 - -
Cca02g00531 113 Gene3D - 1 59 IPR038716 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00531 Cca-Chr2 11402894 11404526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00531 1 113 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 63.717 1.17e-30 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00531 K02943 - tcc:18598192 125.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00531 02 11402894 11404526 Cca02g00531 02 11402894 11404526 ECH
Cca03g02799 03 49342106 49349019 Cca02g00531 02 11402894 11404526 PCT