Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00526 ATGGACTTAAAGTTAACACAATGGAGAAAGCAGCACGAGTCAGAGTCAGAGTCAGAGCAGCATCATTCTCCAAAACTCCTCCATCCACCACCACTCCCTCTTTTTCTACCTCAACTCTCCACCAGGATGGAAAGTTGTTTCAGCTTTGCACAGTGGCAAGAGCTTGAGTTGCAGGCTCTCATATTCAGCTACATGCAGGCTGGTGTTCCTGTTCCTCCTCAACTGCTCCAACCCATCAAGAAAAGCTTCCTTCAACACCATCACCCTGCTTTGATGGAATCAGGGTGCTGGGGAAGAGCAGCACTGGATCCGGAGCCGGGGCGGTGCCGGAGGACCGACGGCAAGAAGTGGCGGTGCTCGAGGGACGCGGTGGCCGGTCAGAAGTACTGCGACCGCCACATGCATCGTGGTCGGAACCGTTCAAGAAAGCCTGTGGAAGTGGAACAACGTCATGCTACTTCATCCTCTGCTTCATTCAACCGCCCTTTCATTCAGCTCAATCAAAGTTCCTCTTGGACCAAGAATGAGAGCAAGAATTTGTTTGAAAAGCATGATCATGTGGATGGGGATGGAAAATCTGGTGGGCATGTCCTGAGGCATTTCTTTGATGATTGGCCAAAGCCTGAAAATGGTGAAAGCAATAGTGGCAGGAGCAACTCTGGAACATGCCTCTCTATGGGAATCACTTCCTCGGATGTGTCGTTGAAATTGTCTACTGGTCATGGAGAGGACACGTGCCACGTGGCTTCAGTGGGAGGACCACTTGCAGAGGCATTGAGATCATCCACTTCCACCTCCACTTCTTCACCAACCAGTGTTCTGCTTCAGTTGCCTCCTAATTCTGCGTGA 849 0.51 MDLKLTQWRKQHESESESEQHHSPKLLHPPPLPLFLPQLSTRMESCFSFAQWQELELQALIFSYMQAGVPVPPQLLQPIKKSFLQHHHPALMESGCWGRAALDPEPGRCRRTDGKKWRCSRDAVAGQKYCDRHMHRGRNRSRKPVEVEQRHATSSSASFNRPFIQLNQSSSWTKNESKNLFEKHDHVDGDGKSGGHVLRHFFDDWPKPENGESNSGRSNSGTCLSMGITSSDVSLKLSTGHGEDTCHVASVGGPLAEALRSSTSTSTSSPTSVLLQLPPNSA 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00526 282 MobiDBLite consensus disorder prediction 1 24 - -
Cca02g00526 282 MobiDBLite consensus disorder prediction 137 156 - -
Cca02g00526 282 Pfam QLQ 47 79 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cca02g00526 282 ProSiteProfiles QLQ domain profile. 46 81 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cca02g00526 282 ProSiteProfiles WRC domain profile. 103 147 IPR014977 -
Cca02g00526 282 PANTHER - 152 281 IPR031137 GO:0005634|GO:0006351|GO:0032502
Cca02g00526 282 PANTHER - 20 154 IPR031137 GO:0005634|GO:0006351|GO:0032502
Cca02g00526 282 SMART QLQ_2 45 81 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cca02g00526 282 PANTHER GROWTH-REGULATING FACTOR 3 20 154 - -
Cca02g00526 282 PANTHER GROWTH-REGULATING FACTOR 3 152 281 - -
Cca02g00526 282 MobiDBLite consensus disorder prediction 259 282 - -
Cca02g00526 282 MobiDBLite consensus disorder prediction 199 223 - -
Cca02g00526 282 Pfam WRC 104 146 IPR014977 -
Cca02g00526 282 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00526 Cca-Chr2 11346765 11349014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00526 1 277 GRF Transcription Factor Family AT3G52910 41.425 6.43e-66 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Cca02g00526 WRC 6.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00526 - - ccaj:109819355 523.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00526 02 11346765 11349014 Cca02g00526 02 11346765 11349014 ECH
Cca03g02492 03 46145006 46148665 Cca02g00526 02 11346765 11349014 PCT