Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00525 ATGGCTGAGAAACACTTACGAGAGCTGCTACAGGAGGAGCAAGAGCCCTTCCTTCTAAAGCACTACATTTCCGAGCGACGCACCCATCTCAAAAGCCCTTCCACTCTCACTaacaaaaacaaaaacaaaaacaaaaacCTGGGCTTCAACAAATGCCTCCTCTCCCTCCACAGCGCCACCAAATCCCCGCTCAACGCTCCCCTCAGGCCCTCCAACGCCAAGACCGCCACGCTCCTCCTGGAGGCCGCGCTCAGAATCCACAAGCCCAAGTCCAAGCCCAACAGGGCCTTCCGCCTCGGCCTCTTCGGCTCGCTCTTCAAGAAACTCACCGCCCGCAAGAGGGAAATAGAGGCCCGCGTGGTGGAGCCTTCCTGTGAGGTCGGGCTCACGTGCTCTTGCAATGCCAGGCCCAGCAGCGCCGTCTGGTCGGAGAGCAACGACTTGGAAACTTCTAGCACTGACGACTCCCTCGAAGACATTCACTTTCTCAACAAACATAAACAAAACAACTCTCACAACCTTTCTTTTCATCATCACACCTTCTTCTGTCACACCCCTTTCCGCTTCTCCCCCCAACGGAGCCCCGACTACTCCGCCCCTCACACTCCGGATTTCTCCCCGTCGCCGCCGTCTCCCACTCGCCACACACCACAGGACAAAGAAATGAATGGTGCTGATGGCGTCAACAAATTCCAATCGGGGGAAGAAGAGGAAGATAAGGAACAGTGCAGTCCAGTATCCGTTTTAGACCCACCCTTCgatgatgatgatgatgatgatgatgatgGGCATGAAAATGACCATGGAGAGGATGGTTTTGATTTGGACTGTAGCTATGCCAATGTACAAAGGACTAAGCTGCAGCTATTAGACAGGCTTCAAAGGTTTGAGAAGCTTGCAGAGTTAGATCCAATAGAGCTTGAGAAAAGAATGTTAGACCAAGAAGAGGAGTATGAAACATTTATTGAAGATGAAACATGTGAAGAAAAGGTTCTGAGAGAAAAAGTGTTTGAAATCCTCTGCCATGCAAGAGTTAATGACATGCAGCAAACCCCTGAAGACCTTAAGAGGCTGGTTTATGATCTCATCATGGAGGAAGAGACCCAAGTTAACTCTTCAGAAGAGAGGAACATGGTAATCAAAAGGGTTTGTAGGAGGCTGGAGTTATGGAAAGAAGTAAAGTCCAACACTATTGATATGATGATACAAGAGGACTTCTCTAGAGAGGAAGGTATGTGGAAGAAAAATGCTGACCAGACAAGGGAGATAGCTTTGGAACTTGAACATGCTATCTTTTGCTTTCTAGTGGAGGAACTAGTGTGTTAA 1326 0.4759 MAEKHLRELLQEEQEPFLLKHYISERRTHLKSPSTLTNKNKNKNKNLGFNKCLLSLHSATKSPLNAPLRPSNAKTATLLLEAALRIHKPKSKPNRAFRLGLFGSLFKKLTARKREIEARVVEPSCEVGLTCSCNARPSSAVWSESNDLETSSTDDSLEDIHFLNKHKQNNSHNLSFHHHTFFCHTPFRFSPQRSPDYSAPHTPDFSPSPPSPTRHTPQDKEMNGADGVNKFQSGEEEEDKEQCSPVSVLDPPFDDDDDDDDDGHENDHGEDGFDLDCSYANVQRTKLQLLDRLQRFEKLAELDPIELEKRMLDQEEEYETFIEDETCEEKVLREKVFEILCHARVNDMQQTPEDLKRLVYDLIMEEETQVNSSEERNMVIKRVCRRLELWKEVKSNTIDMMIQEDFSREEGMWKKNADQTREIALELEHAIFCFLVEELVC 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00525 441 MobiDBLite consensus disorder prediction 251 267 - -
Cca02g00525 441 Pfam Domain of unknown function (DUF4378) 324 438 IPR025486 -
Cca02g00525 441 PANTHER - 1 439 - -
Cca02g00525 441 MobiDBLite consensus disorder prediction 193 274 - -
Cca02g00525 441 PANTHER OS04G0572500 PROTEIN 1 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00525 Cca-Chr2 11294471 11298198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00525 3 439 TRM (TON1 Recruiting Motif) Superfamily AT2G36420 30.105 5.74e-32 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00525 - - gmx:100782984 483.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00525 02 11294471 11298198 Cca02g00525 02 11294471 11298198 ECH
Cca03g02488 03 46098099 46101758 Cca02g00525 02 11294471 11298198 PCT