Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00523 ATGAACAAAACGCAGAAACGAAAAGCGGGGAGGAAGAAGTTCCAGGAGACACGTCACCCAGTTTACAAAGGAGTGAGGCAGAGGAACGGGAAGTGGGTGTGCGAGCTGCGACAGCCCAACCACAAAAACGCGCGCGTCTGGCTCGGAACCTTCACGCGCCCCGACATGGCTGCGCTCGCCTACGACGTTGCCGCGCTCGCCTTCAAGGGCGACAGCGCTTCCTTGAACTTCCCGCATGCGGCAACCTCGTTGCCGCGCCTCAACTCGCGCACGTCTTCCGTCAGGGCCATTCAGAATGCGGCCACTCAGGCGGCCGAGAGCCATTTTTTGATGCCCACCGAGGTTTCCTCCCAGGAAGCTTCTGGAAGCTTCTTCTGGGACGAGGAGGAGGTGTTTAACTTGCCGGAGCTGTTGAACAGCATGGCCGAGGCGTTGATCATGACGCCACCGGCTTTGCAGAATGGCTTCAATTGGGTTGCTGGGGAAAGTGAAACCACTGTGGATTTGACTCTATGGGGAAACTGA 525 0.579 MNKTQKRKAGRKKFQETRHPVYKGVRQRNGKWVCELRQPNHKNARVWLGTFTRPDMAALAYDVAALAFKGDSASLNFPHAATSLPRLNSRTSSVRAIQNAATQAAESHFLMPTEVSSQEASGSFFWDEEEVFNLPELLNSMAEALIMTPPALQNGFNWVAGESETTVDLTLWGN 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00523 174 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 11 172 - -
Cca02g00523 174 Pfam AP2 domain 20 70 IPR001471 GO:0003700|GO:0006355
Cca02g00523 174 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 11 172 - -
Cca02g00523 174 CDD AP2 22 80 IPR001471 GO:0003700|GO:0006355
Cca02g00523 174 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Cca02g00523 174 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Cca02g00523 174 PRINTS Ethylene responsive element binding protein signature 60 80 IPR001471 GO:0003700|GO:0006355
Cca02g00523 174 SUPERFAMILY DNA-binding domain 21 79 IPR016177 GO:0003677
Cca02g00523 174 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Cca02g00523 174 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00523 Cca-Chr2 11271344 11272236 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00523 6 172 AP2-EREBP Transcription Factor Family AT4G25470 43.011 4.44e-42 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca02g00523 AP2 1.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00523 - - ccaj:109805848 352.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00523 02 11271344 11272236 Cca02g00523 02 11271344 11272236 ECH
Cca02g00523 02 11271344 11272236 Cca03g02484 03 46058812 46059998 PCT