Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00522 ATGCATCCCAGCAGCAGCAAAGGCTTTTCCGGTTGCTACCGCGGCGTCAGGCGTAGGGCAAACGGCAAATGGGTGTCCGAAATCCGTGAGCCCAAGAAACCTAACAGAATTTGGTTAGGCACCTTCCCTACGCCTGAAATGGCCGCGGTAGCCTATGATGTCGCAGCATTAGCTCTCAAGGGTAAGAATGCTGAGCTCAACTTCCCTGACTCCGCTTCTTCTCTTCCTGTTCCTGCTTCGCTCTCTGCGCATGACATTCAggtggcggcggcggcggcggcggcggctgcTGGAGCAGCTAAGGATGCCATGCGAACGCAGGCAGAGGATAATAATGTTTCAGCGGCGCAAGAGAAGCAAACAGCAGTGATGAGTAGTAACCAGTTTGTGGATGAGGATTTGATCTTTGACATGCCTAATGTTCTCATCAATATGGCTGAGGGAATGCTGCTTAGTCCTCCTCCTTTTGATATCGGTGGTGAACCTAATACCCCAGAAAACATGGAACAAGAGACAAGCCTGTGGAATTTCCCCTAA 537 0.4711 MHPSSSKGFSGCYRGVRRRANGKWVSEIREPKKPNRIWLGTFPTPEMAAVAYDVAALALKGKNAELNFPDSASSLPVPASLSAHDIQVAAAAAAAAAGAAKDAMRTQAEDNNVSAAQEKQTAVMSSNQFVDEDLIFDMPNVLINMAEGMLLSPPPFDIGGEPNTPENMEQETSLWNFP 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00522 178 Pfam AP2 domain 12 61 IPR001471 GO:0003700|GO:0006355
Cca02g00522 178 PRINTS Ethylene responsive element binding protein signature 13 24 IPR001471 GO:0003700|GO:0006355
Cca02g00522 178 PRINTS Ethylene responsive element binding protein signature 51 71 IPR001471 GO:0003700|GO:0006355
Cca02g00522 178 SMART rav1_2 12 75 IPR001471 GO:0003700|GO:0006355
Cca02g00522 178 CDD AP2 13 71 IPR001471 GO:0003700|GO:0006355
Cca02g00522 178 Gene3D AP2/ERF domain 12 70 IPR036955 GO:0003700|GO:0006355
Cca02g00522 178 ProSiteProfiles AP2/ERF domain profile. 12 69 IPR001471 GO:0003700|GO:0006355
Cca02g00522 178 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 178 - -
Cca02g00522 178 MobiDBLite consensus disorder prediction 157 178 - -
Cca02g00522 178 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 7 178 - -
Cca02g00522 178 SUPERFAMILY DNA-binding domain 12 71 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00522 Cca-Chr2 11226797 11227707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00522 12 178 AP2-EREBP Transcription Factor Family AT2G36450 60.440 5.34e-52 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca02g00522 AP2 4.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00522 - - gmx:100811614 273.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00522 02 11226797 11227707 Cca02g00522 02 11226797 11227707 ECH
Cca03g02484 03 46058812 46059998 Cca02g00522 02 11226797 11227707 PCT