Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00520 ATGGAAATGGAAGATcaccatcatcaccaccaccacctccaccatcagcatcaacaacaacaacaacaccaacaacaacacttcaacatcaacatgaacatgaacgatcTCAGGCAAGTGCTCAATGGGCCGAGGCCGCCCCATAACAACCTCCCCTCCATGCCGCCGGTGCTTTTCCCCGGCCACCACCGGAATCTCGGGCCAACACCCTTGCCCTCTCCCCAACAACATCACTACGAGGTTATGATGTTCGGTCGCGACATAATGCCACCTGGCCTCCACGACTTTGCTTCCACCACCCATGATTCTTCTGCAGCCACCACCGTCGCCGCCGTACCCACTCCACCCGCCACTAGTGCCTTTGACGCCGAGGGTGCAGCTTGCATCGGTGCAGACCCCTCCACCGGAAGATGGCCCAGACAGGAGACTCTAACTCTTCTTGAGATCAGATCTCGCTTGGACCCTAAATTCAAAGAGGCTAATCACAAGGGTCCCTTATGGGATGAAGTCTCTAGGATCATGTCTGAAGAACATGGATATCAAAGGAGTGGGAAGAAGTGCAGGGAGAAGTTTGAGAATTTGTACAAATATTACAAGAAGACAAAGGAAGGTAAGGCAGGAAGGCATGATGGGAAGCACTACAGATTCTTTCGTCAACTTGAAGCCTTATATGGAGAAAACAGTAACACAGTTTCAGTCCCGGAAACCAATGTTGTTGGCACCATTCATTTTCAAGCAAGCAGCCACGCCCCTTCCCAAACAAATCAAGAAAAGTTTCAGTCTCACAATAACAAGCATTGTGACAGCCTCAGCCTCACTAACTCCACAAACTTTGACACATCATCATCTGAGGATGATGAATATGATCACAGCATGGAGAATGAGTCCATGGagaagaggagaaagaggaagagtgggaggagttggaaagtgaagaTAAAAGACTTCATTGACTCACAGATGAGGAAGCTGGTGGAGAAGCAAAAGGAGTGGTTGGATAAACTGGTGAAGACACTTGAAGAGAAGGAAAAAGATAGGATGCTGAGAGAGGAAGAGTGGAGGAAACAAGAGGCAAACAGGTTAGAGAGGGAACAAAAGTTTTGGGCTAAAGAGAGAGCATGGATTGAAGCCAGGGATAGTGCTCTAATGGAGGCTTTGCAAAAATTAACTGGGACACAGATAATGAAGGATGAAACTCATTCTGAGGGTATAAATGCAGTAGCAGCTGAAGTTCAAAACCAGAATAATGAAGATGGAAGTGAAATCTTAAACAGCAATACTATCATCAGAGGTTCTGATAGCTGGCAAGAATCTGAGATCACAAGGCTTCAACAGTTGAGAGCTGAGTTGGAGACAAGTTTTCTTCATAGTGAAATTTCAGAAGAGGTTACATGGGAGGTAGTAGCTAACAAAATGGCTTGTTTTGGCTACGAAAGGAGTGCTTTGATGTGCAAAGAGAAATGGGAAAGTATGAGTAACAACTATTCAAGGGAGGATAACAAGGAAGGGAACAAGAAGCGCAAGGAAAACTCTAGAACCAGCTTTTACTTCAAGAACGATGATGATCAACAATCTTCCCTATACGATCATGGAAGTGCATATTGTGGTGATATGAATGATCAAGGGAAAGTGATTGAGAGGCTACAAAGAAATAATGGTTCTTCACCTTCAAAATCAAATGTTGGAAATGTTGCTCCCTCTGATAGTTGCTTTCCCTTCTTGATGAGTGCTGAGGGTGGAAACTTGTGGGAGAACTATGGCTTAAAGTTCAATAAAGCAAACCAAAACCACTGA 1794 0.4164 MEMEDHHHHHHHLHHQHQQQQQHQQQHFNINMNMNDLRQVLNGPRPPHNNLPSMPPVLFPGHHRNLGPTPLPSPQQHHYEVMMFGRDIMPPGLHDFASTTHDSSAATTVAAVPTPPATSAFDAEGAACIGADPSTGRWPRQETLTLLEIRSRLDPKFKEANHKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRHDGKHYRFFRQLEALYGENSNTVSVPETNVVGTIHFQASSHAPSQTNQEKFQSHNNKHCDSLSLTNSTNFDTSSSEDDEYDHSMENESMEKRRKRKSGRSWKVKIKDFIDSQMRKLVEKQKEWLDKLVKTLEEKEKDRMLREEEWRKQEANRLEREQKFWAKERAWIEARDSALMEALQKLTGTQIMKDETHSEGINAVAAEVQNQNNEDGSEILNSNTIIRGSDSWQESEITRLQQLRAELETSFLHSEISEEVTWEVVANKMACFGYERSALMCKEKWESMSNNYSREDNKEGNKKRKENSRTSFYFKNDDDQQSSLYDHGSAYCGDMNDQGKVIERLQRNNGSSPSKSNVGNVAPSDSCFPFLMSAEGGNLWENYGLKFNKANQNH 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00520 597 Pfam Myb/SANT-like DNA-binding domain 433 511 IPR044822 -
Cca02g00520 597 Pfam Myb/SANT-like DNA-binding domain 137 223 IPR044822 -
Cca02g00520 597 MobiDBLite consensus disorder prediction 1 25 - -
Cca02g00520 597 MobiDBLite consensus disorder prediction 492 524 - -
Cca02g00520 597 PANTHER - 50 590 - -
Cca02g00520 597 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 50 590 - -
Cca02g00520 597 MobiDBLite consensus disorder prediction 283 302 - -
Cca02g00520 597 MobiDBLite consensus disorder prediction 247 281 - -
Cca02g00520 597 CDD GT1 137 202 - -
Cca02g00520 597 CDD GT1 435 495 - -
Cca02g00520 597 ProSiteProfiles Myb-like domain profile. 434 492 IPR001005 -
Cca02g00520 597 ProSiteProfiles Myb-like domain profile. 130 195 IPR001005 -
Cca02g00520 597 SMART sant 134 197 IPR001005 -
Cca02g00520 597 SMART sant 431 494 IPR001005 -
Cca02g00520 597 Gene3D - 435 497 - -
Cca02g00520 597 Gene3D - 138 200 - -
Cca02g00520 597 Coils Coil 332 352 - -
Cca02g00520 597 MobiDBLite consensus disorder prediction 247 304 - -
Cca02g00520 597 MobiDBLite consensus disorder prediction 492 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00520 Cca-Chr2 11126224 11129487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00520 137 592 Trihelix Transcription Factor Family AT5G03680 49.174 2.24e-134 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Cca02g00520 Myb_DNA-bind_4 5.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00520 - - aprc:113870891 869.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00520 02 11126224 11129487 Cca02g00520 02 11126224 11129487 ECH
Cca03g02483 03 46033030 46036399 Cca02g00520 02 11126224 11129487 PCT