Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00516 ATGGAAATGCCTGCCAGAAGATCCAACTACTCGCTCCTCAGCCAAATTCCCGACGACCAGTTTTCCGGCCCCGCCGCGCCGTCCTCCTCCGGCGACGGGAAGAACGGCCGCGGCGGCAAGGCGGACCGCGCCTTCGACTGGGACCTCGTCGCCGATCACAGGGCGGCGCAGCAGGGGACCAACCGGATCGGAAACCTGTACTCCTCGATCGGCCTGCAGAGGCAGTCCAGCGGGAGCAGCTACGGCGAGAGCTCGCTCTCCGGCGGCGGCGACTTCTACGCTCCCACGCTGTCCACGGCGGCGGCCAGCGAGGTCGACGCCTTCGGCTACCTCCATGACGAGCGGAGCAAGTTCTCCGAGGCGCCGGCGAGGATCTCCGGCTCCTCCGGGAAGAGCTGGGCGCAGCAGACGGAGGAGAGTTATCAGCTGCAGCTTGCGCTCGCGCTGCGGTTGTCGTCGGACGCCACGTGCGCCGATGATCCCAATTTCCTCGATCCGGTGCCGGACGATTCGTCTATGCGGCTCTCGTCGTCCGCGGAGGCGGTTTCGCATAGGTTCTGGGTGAATGGCTGCCTGTCATACTCTGACAAAATTCCAGATGGCTTTTACCTAATTCATGGGATGGATTCCTATGTCTGGACCGTATGCACTGATCTGCATGAAAATGGCCGAATTCCATCAGTTGATACACTGAAGTCTGTGAATCCCTGCATCATTTCTTCACTTGAAGTAGTTTTGGTGGATCGACGCAGTGACCCCAGCTTAAGAGATCTTCAAAATAGAGTTCATAGCATTTCTTGTAGCAGCATAACAACAACAGATGTTGTAGATCAGCTTTCGAAGCTGATTTGCAACCGTATGGGGGGTTCAGCTTCTATTGGGGAAGATAATTTTTTTTCCATCTGGAGGGATTGCAGTAATGATCTGAAAGATTGCTTAGGATCTGTTGTTATTCCCATAGGTAGTCTATCTGTTGGCCTCTGCAGGCATCGTGCTGTATTATTCAAAGTATTGGCTGATGCCATCGATTTGCCATGTCGAATTGCAAAGGGCTGTAAATATTGCAAAAGGGATGATGCAGCATCTTGTCTTGTTCGATTTGGGCTTGAGAGGGAATATCTTGTTGATTTAATTGGAAAGCCAGGAAGCTTATCCGAGCCTGATTCCTTGCTCAATGGTCCATCTTCCATCTCATTTTCTTCACCCTTGCGCTTTCCACGACTTAAACCAGCGGACCCTACCATTGATTTCAGGTCGCTGGCCAAACAGTATTTCTCAGACAATCTGTCTCTTGAGCTTGTCTTCGACAACAGTTCTGCAGAACAGTTTGATGCGAAGTGCAAAGACAGGAATAACACTAGGCCAATTTCAACTGAGAGCAATAGAAGTTCTCACCTTCCTCTGCATCCCCAGGATTCTACTCCAGGCACACATGAACAAGGTTCTGAAACATATCTATCATGTAACCCTCCTCAGAACATTGTAGACTTGACAACTGTGGGAAAGTATCCACCGCCGATAAAGCATAAGCGTCCTGTTGGTATACCGACCCCGTTAGCATTTCCAAATACTAATGATGACATGATTGAGGGCAAGAGGTTTGTTGAAGGAAGTCAACTGATTCCTAACAAATCTACTCGAGAGCTTACCCTTGACATGGAGGATTTGGACATTCCGTGGAGTGATCTTGTTTTAAGAGAGAAAATAGGGTCAGGTTCTTTTGGAACTGTGCATCGTGCTGAATGGAATGGCTCGGATGTTGCTGTGAAAATTTTGATGGAACAGGATTTTCATGCTGAGCGCTTTAAGGAATTCCTTAGGGAGGTTGCAATAATGAAACGTTTGCGGCATCCAAACATTGTTTTGTTTATGGGGGCAGTCACTCAGCCTCCTAACTTGTCAATTGTTACGGAATATTTATCAAGGGGTAGCTTATATAGACTGTTGCATAGATCTGGTGCCAAGGAAGTGTTGGATGAGAGGCGTAGGCTTAGTATGGCTTATGATGTGGCAAAGGGGATGAATTATCTACATAAACGTAATCCCCCAATTGTTCACAGAGATCTGAAATCTCCCAACCTTCTTGTTGACAAGAAATATACTGTGAAGGTTTGTGATTTTGGGCTTTCACGTCTGAAGGCCAATACGTTTCTCTCATCCAAGTCAGCTGCTGGGACTCCTGAGTGGATGGCTCCAGAGGTTCTTCGCGACGAGCCATCAAATGAGAAGTCCGATATTTACAGCTTTGGTGTAATCTTATGGGAGCTTGCAACATTGCAACAACCCTGGGTTAATTTAAATCCAGCACAGgttgtggctgctgttggcttcaagggaaaacggcttgagatcccacgtgatgtGAATCCCCAAGTAGCTGCACTAATTGAGGCTTGCTGGGCCAGTGAGCCTTGGAAACGACCTTCTTTTGCGAGTATTATGGATTCTTTGAGGCCATTGCTCAAACCCCCAACACCTCAACCTGGTCGTCCGAACATGCCACTAACCTGA 2511 0.4815 MEMPARRSNYSLLSQIPDDQFSGPAAPSSSGDGKNGRGGKADRAFDWDLVADHRAAQQGTNRIGNLYSSIGLQRQSSGSSYGESSLSGGGDFYAPTLSTAAASEVDAFGYLHDERSKFSEAPARISGSSGKSWAQQTEESYQLQLALALRLSSDATCADDPNFLDPVPDDSSMRLSSSAEAVSHRFWVNGCLSYSDKIPDGFYLIHGMDSYVWTVCTDLHENGRIPSVDTLKSVNPCIISSLEVVLVDRRSDPSLRDLQNRVHSISCSSITTTDVVDQLSKLICNRMGGSASIGEDNFFSIWRDCSNDLKDCLGSVVIPIGSLSVGLCRHRAVLFKVLADAIDLPCRIAKGCKYCKRDDAASCLVRFGLEREYLVDLIGKPGSLSEPDSLLNGPSSISFSSPLRFPRLKPADPTIDFRSLAKQYFSDNLSLELVFDNSSAEQFDAKCKDRNNTRPISTESNRSSHLPLHPQDSTPGTHEQGSETYLSCNPPQNIVDLTTVGKYPPPIKHKRPVGIPTPLAFPNTNDDMIEGKRFVEGSQLIPNKSTRELTLDMEDLDIPWSDLVLREKIGSGSFGTVHRAEWNGSDVAVKILMEQDFHAERFKEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHRSGAKEVLDERRRLSMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKANTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDIYSFGVILWELATLQQPWVNLNPAQVVAAVGFKGKRLEIPRDVNPQVAALIEACWASEPWKRPSFASIMDSLRPLLKPPTPQPGRPNMPLT 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00516 836 ProSiteProfiles Protein kinase domain profile. 563 821 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00516 836 Pfam Protein tyrosine and serine/threonine kinase 564 817 IPR001245 GO:0004672|GO:0006468
Cca02g00516 836 PRINTS Tyrosine kinase catalytic domain signature 637 650 IPR001245 GO:0004672|GO:0006468
Cca02g00516 836 PRINTS Tyrosine kinase catalytic domain signature 678 696 IPR001245 GO:0004672|GO:0006468
Cca02g00516 836 PRINTS Tyrosine kinase catalytic domain signature 725 735 IPR001245 GO:0004672|GO:0006468
Cca02g00516 836 PRINTS Tyrosine kinase catalytic domain signature 744 766 IPR001245 GO:0004672|GO:0006468
Cca02g00516 836 PRINTS Tyrosine kinase catalytic domain signature 788 810 IPR001245 GO:0004672|GO:0006468
Cca02g00516 836 Pfam Ethylene-responsive protein kinase Le-CTR1 179 384 - -
Cca02g00516 836 MobiDBLite consensus disorder prediction 8 29 - -
Cca02g00516 836 ProSitePatterns Protein kinases ATP-binding region signature. 569 590 IPR017441 GO:0005524
Cca02g00516 836 Gene3D Phosphorylase Kinase; domain 1 556 641 - -
Cca02g00516 836 ProSitePatterns Serine/Threonine protein kinases active-site signature. 684 696 IPR008271 GO:0004672|GO:0006468
Cca02g00516 836 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 121 827 - -
Cca02g00516 836 SUPERFAMILY Protein kinase-like (PK-like) 542 816 IPR011009 -
Cca02g00516 836 SMART serkin_6 563 821 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00516 836 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 121 827 - -
Cca02g00516 836 MobiDBLite consensus disorder prediction 1 41 - -
Cca02g00516 836 MobiDBLite consensus disorder prediction 456 490 - -
Cca02g00516 836 MobiDBLite consensus disorder prediction 444 490 - -
Cca02g00516 836 CDD STKc_MAP3K-like 569 817 - -
Cca02g00516 836 Gene3D Transferase(Phosphotransferase) domain 1 642 826 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00516 Cca-Chr2 11049976 11058933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00516 1 833 MAP Kinase Kinase Kinase AT5G03730 64.766 0.0 1006
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Cca02g00516 PK_Tyr_Ser-Thr 3.9e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00516 K14510 - gmx:100800648 1519.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00516 02 11049976 11058933 Cca02g00516 02 11049976 11058933 ECH
Cca03g02475 03 45915329 45927033 Cca02g00516 02 11049976 11058933 PCT