Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00512 ATGGAACCCACTCTCGGCAGCACCGTTTCTGCACCCTCCCTCACACCCTCGGTTCCCCAGACATTGAACATGAACGTCAACATGAACGTGGGGAGCACCGAAACGACAACAACGGTGGTGCCACCTGCGCCTGCGCCTGTGCCTGTGCCAGCCacaacaacaacaacggcagcagcagtgacaccaacaacaTTGGCGCAAGGGAGTTTGGATTTGTTTGGGAAGAAGAAGAGAGGGAGGCCGAGGAAGTACGACGCAGATGGGAACCTGAGGGTGAGTGCAACGCCGCAACCACCACCACCGCCGGGTTTCACTTTATCGACACCACCTGAGTTTTCTTCCAAAAGGGGTCGTGGCAAACACGCCGCGTTTGGAACCTACCAACCCTTTTCTTCTTTTGGTGAGGTGTTTGCAAACACTGCTGTTGGGGATTTTATACCGCATGTGGTGACTGTTTATACTGGAGAGGATGTTGCTGGGAAGATCATGTCCCTTGTGCAGAAGGGTCCAAGAGGAATATGCATTCTCTCTGCCAATGGGGCTATCTCAAATGTGACCATTCGCCAACCCGGTTCTTCTGGTGGCATATTGACATACGAGGGTCGGTTTGAGATTTTATCTTTGTCTGGATCATTCACTCTCACTGACAGCACTGGCATAAGAAGTCGAACTGGTGGATTGAGTGTCTCACTTGCTGGCCCTGATGGTCGGGTGATAGGAGGTGGTGTTGCTGGACTTTTAACTGCTGCTGGCCCCATCCAAATTGTGGTAGGAAGCTTCATGCAAAATGGTTACAAGGCCCAAAAGAGGAAGTATCAACATCGTGAGCAGGCATTGGCCTCCCCTACTTCACCTGTTCCAGACATAGTAGTGACAGCAGCAAGACCTATCTCACAAGCACATGCTGATGGTGAAAACTTTCTGATGCATATGTCTCAGATACCAGACCAAAACCAGAGAGAATCTGTCAGTGTTACAAGTGACAAACAGAACCTTGATGCTACACCTGATGCTACTGCTACTTGGAATGGCTCTGAGGACTATGATGATCAGAGGACATCTCCAGACATCAACATAACCTTGCCAGATGAATAG 1095 0.4849 MEPTLGSTVSAPSLTPSVPQTLNMNVNMNVGSTETTTTVVPPAPAPVPVPATTTTTAAAVTPTTLAQGSLDLFGKKKRGRPRKYDADGNLRVSATPQPPPPPGFTLSTPPEFSSKRGRGKHAAFGTYQPFSSFGEVFANTAVGDFIPHVVTVYTGEDVAGKIMSLVQKGPRGICILSANGAISNVTIRQPGSSGGILTYEGRFEILSLSGSFTLTDSTGIRSRTGGLSVSLAGPDGRVIGGGVAGLLTAAGPIQIVVGSFMQNGYKAQKRKYQHREQALASPTSPVPDIVVTAARPISQAHADGENFLMHMSQIPDQNQRESVSVTSDKQNLDATPDATATWNGSEDYDDQRTSPDINITLPDE 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00512 364 SUPERFAMILY AF0104/ALDC/Ptd012-like 144 267 - -
Cca02g00512 364 ProSiteProfiles PPC domain profile profile. 142 285 IPR005175 -
Cca02g00512 364 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 32 363 - -
Cca02g00512 364 MobiDBLite consensus disorder prediction 1 20 - -
Cca02g00512 364 CDD DUF296 147 260 IPR005175 -
Cca02g00512 364 Pfam Plants and Prokaryotes Conserved (PCC) domain 147 261 IPR005175 -
Cca02g00512 364 MobiDBLite consensus disorder prediction 75 119 - -
Cca02g00512 364 MobiDBLite consensus disorder prediction 316 358 - -
Cca02g00512 364 Gene3D - 147 277 - -
Cca02g00512 364 MobiDBLite consensus disorder prediction 316 364 - -
Cca02g00512 364 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 32 363 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00512 Cca-Chr2 10911538 10916584 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00512 75 331 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 48.540 3.62e-69 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00512 - - gmx:100779227 494.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00512 02 10911538 10916584 Cca02g00512 02 10911538 10916584 ECH