Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00508 ATGGCTTGTATGTGGCTGAAGAATGCCTGCGGTGGCAGCGGGAAGAAGCCGCCGGCGGATGTGCCGCGCGGGCACTTGGCGGTGGCGGTGGGAGAGGCAAAGAGAAGGTTTGTGATAAGGGCTGACTACCTTAACCATCCATTGCTTCAACAACTGCTGGAACAAGCATATGAAGGCAAGGGCTTCAACAAGAGTGGTCCTCTGGCTATACCTTGTGATGAGTTCCTTTTTGAAGATATCATTCAAACCCTAAGAGATGGAACATCCTCTACTCATGTCCCTCTCAAGAAGCTACACTTGCCCTTGTCCAAGGACACTCTCCCCTTACTTCAAGGCCGGAGGAGCACCAACTAA 354 0.5198 MACMWLKNACGGSGKKPPADVPRGHLAVAVGEAKRRFVIRADYLNHPLLQQLLEQAYEGKGFNKSGPLAIPCDEFLFEDIIQTLRDGTSSTHVPLKKLHLPLSKDTLPLLQGRRSTN 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00508 117 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 1 93 IPR003676 GO:0009733
Cca02g00508 117 Pfam Auxin responsive protein 15 84 IPR003676 GO:0009733
Cca02g00508 117 PANTHER AUXIN RESPONSIVE SAUR PROTEIN 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00508 Cca-Chr2 10839999 10840730 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00508 1 91 Calmodulin-binding Proteins AT4G34750 53.261 2.12e-28 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00508 K14488 - gmx:100777611 208.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00508 02 10839999 10840730 Cca02g00508 02 10839999 10840730 ECH