Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00504 atgtccttctccatcgccaCCCTTTCCGATTTCTTCAACTATTCGATTAAGGGAGTTGAAAACCCTCACAATTTGCCACACCATCCCCAAATGGTACCCTATGCCACCCATCATGAAACTGATCCGCACCATCCACACCTTCAGCACCAATCGATCAAACATGGCTACCCTAACTATTCTTCATCCAAGACCAaacaaccccaacaacaacaacaacaaAGCACTCTCAGTGATGAGGATGAGCCAGGTGGTGATGAGGACCCCAAGAGAAAGGTCTCACCTTGGCAGAGAATGAAGTGGACTGACACCATGGTGAGGCTCTTGATTATGGCGGTTTATTACATTGGCGATGAGGCTGGCTCTGAAGGGAGTGATAAGAAGAAATCCTCTGGTTTGATGCAGAAGAAGGGGAAGTGGAAGTCGGTGTCAAGGGCCATGATGGAGAAGGGGTTCTATGTTTCTCCTCAACAGTGTGAGGACAAGTTCAATGACTTGAACAAGAGGTACAAGAGGGTGAATGATATCCTTGGCAAGGGAACGGCTTGCAGGGTTGTGGAGAATCAGAGTCTGTTGGACACAATGGACTTGTCTCCAAAGATGAAAGAGGAGGTTAAGAAGTTGCTCAATTCTAAGCATTTGTTCTTCAGGGAGATGTGTGCTTATCATAATAGTTGTGGCCATGGGAATAATAGCAATGTTCCGCAGCAAGGAGAGTCTGGGGGGGAGGTGTCTCAGTCTCAGGCacaaccacaaccacagccacatcagcagcagcagcagcaacaacaacaacaacGTTGTTTTCATTCATCAGAGAATATGGTGGGGAATTTGGGGGGTTTGAGGATGTTGAAAGTGGGAAatggggaagaggaggatgaggaggaggaggaggaggatgagtctgaggatgattcagatgaggatgaagatgattcaggagaaggtggttcaaggggtcaagtggggcatggacatgaggatgagaatgatggaAGGTCAACGAGGAAGAGGGCAAGGAAAGGGGTTTCCATGTCACCACATGTGATGCAGCAACTGAATGCTGAGGTGAGTGGTGTGTTCCAAGATGGGGGTAGGAGTGCTTGGGACAAGAAGCAATGGATGAGGGGCAGGATAATGCAGTTGGAGGAGCAGCAATTGAGCTATCAAACTCAAGCATTTGAGTTGGAGAAACAAAGGCTGAAATGGGCAAGGTTTAGCAGCAAGAAGGAGAGGGAGATGGAGAGAGCCAAACTTGAAAATGAACGAAGGAGGCTTGAGAATGAGAGAATGGTTTTGCTCATTCGTCAGAAGGAGATTGAATTGATGAGTcatcaacaccaacatcagcagcagcagcaacaacaacaacaTTCGTCTACCTAG 1386 0.3788 MSFSIATLSDFFNYSIKGVENPHNLPHHPQMVPYATHHETDPHHPHLQHQSIKHGYPNYSSSKTKQPQQQQQQSTLSDEDEPGGDEDPKRKVSPWQRMKWTDTMVRLLIMAVYYIGDEAGSEGSDKKKSSGLMQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENQSLLDTMDLSPKMKEEVKKLLNSKHLFFREMCAYHNSCGHGNNSNVPQQGESGGEVSQSQAQPQPQPHQQQQQQQQQQRCFHSSENMVGNLGGLRMLKVGNGEEEDEEEEEEDESEDDSDEDEDDSGEGGSRGQVGHGHEDENDGRSTRKRARKGVSMSPHVMQQLNAEVSGVFQDGGRSAWDKKQWMRGRIMQLEEQQLSYQTQAFELEKQRLKWARFSSKKEREMERAKLENERRRLENERMVLLIRQKEIELMSHQHQHQQQQQQQQHSST 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00504 461 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 19 461 - -
Cca02g00504 461 Gene3D - 100 171 - -
Cca02g00504 461 Coils Coil 379 399 - -
Cca02g00504 461 Pfam Myb/SANT-like DNA-binding domain 97 220 IPR044822 -
Cca02g00504 461 MobiDBLite consensus disorder prediction 53 78 - -
Cca02g00504 461 MobiDBLite consensus disorder prediction 290 314 - -
Cca02g00504 461 MobiDBLite consensus disorder prediction 230 267 - -
Cca02g00504 461 MobiDBLite consensus disorder prediction 24 95 - -
Cca02g00504 461 PANTHER F16F4.11 PROTEIN-RELATED 19 461 - -
Cca02g00504 461 MobiDBLite consensus disorder prediction 288 346 - -
Cca02g00504 461 MobiDBLite consensus disorder prediction 315 338 - -
Cca02g00504 461 Coils Coil 407 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00504 Cca-Chr2 10746135 10748130 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Cca02g00504 Myb_DNA-bind_4 9.6e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00504 - - gmx:100816661 618.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00504 02 10746135 10748130 Cca02g00504 02 10746135 10748130 ECH
Cca03g02461 03 45697493 45699315 Cca02g00504 02 10746135 10748130 PCT