Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00503 ATGGAGTGGAATGGGAGCACAAGACGTTATGTTCCTCGACCAGAGGCTTCCTTAAGCTTCCTTTACAACTACAACTACACCCCATATCCAGGAATGGAAGTGAAAGAACAAACACTAGCGGAGACAAGTTCATCGATGGAGAAAATAAACTGCGGGAGCCAGGAGAAGAAGAAGCGATTAACAAGTGAGCAGTTAGACTCACTGGAGAGTAGCTTTCAGAAGGAGATAAAGTTAGACCCAGATAGGAAGATGAAGCTTTCCAAGGAGCTAGGGCTTCAACCTCGCCAAATTGCTGTTTGGTTCCAAAATAGGCGTGCAAGGTGGAAGAACAAGCAACTTGAACACTTGTACGATTCACTTAAGGAGGAGTTTGATGTCATATCAAAGGAAAAACAGAAGCTCGAGGAAGAGGTGATGAAGTTGAAGGCAATGGTGAGAGAGCAAGCTTCTAGAACCCAAGTGTCAACAGGTTACACAGAAATCTCTGGGGAGGAAACAGTAGAAAGCACGTCAGAGGCTCTGCGTTGCTCCAAACGGGGAACACTgcaccatcatcatcagcaacagcagcagcagAATATTGGAGAGGGAAACTGTTCTGCTTTCACTTTGGAGGATTACAACACAGTTCCAGTACTACCCTATTGGCCTGGGGTTAACGTTCCTTATTATCCCTAG 678 0.4322 MEWNGSTRRYVPRPEASLSFLYNYNYTPYPGMEVKEQTLAETSSSMEKINCGSQEKKKRLTSEQLDSLESSFQKEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKNKQLEHLYDSLKEEFDVISKEKQKLEEEVMKLKAMVREQASRTQVSTGYTEISGEETVESTSEALRCSKRGTLHHHHQQQQQQNIGEGNCSAFTLEDYNTVPVLPYWPGVNVPYYP 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00503 225 Coils Coil 103 151 - -
Cca02g00503 225 MobiDBLite consensus disorder prediction 45 64 - -
Cca02g00503 225 Gene3D - 50 116 - -
Cca02g00503 225 PRINTS Lambda-repressor HTH signature 82 91 IPR000047 GO:0003677
Cca02g00503 225 PRINTS Lambda-repressor HTH signature 91 107 IPR000047 GO:0003677
Cca02g00503 225 CDD homeodomain 56 112 IPR001356 GO:0003677
Cca02g00503 225 SMART HOX_1 54 115 IPR001356 GO:0003677
Cca02g00503 225 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 214 - -
Cca02g00503 225 Pfam Homeodomain 56 110 IPR001356 GO:0003677
Cca02g00503 225 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Cca02g00503 225 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
Cca02g00503 225 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 214 IPR045224 GO:0003700
Cca02g00503 225 Pfam Homeobox associated leucine zipper 111 145 IPR003106 GO:0006355|GO:0043565
Cca02g00503 225 SUPERFAMILY Homeodomain-like 46 113 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00503 Cca-Chr2 10689277 10691909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00503 52 150 Homeobox Transcription Factor Family AT2G36610 67.290 2.39e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca02g00503 Homeodomain 4.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00503 - - gmx:100778007 395.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00503 02 10689277 10691909 Cca02g00503 02 10689277 10691909 ECH
Cca02g00503 02 10689277 10691909 Cca03g02459 03 45670569 45673230 PCT