Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00502 ATGGTTCTCAAGACCGAACTTTGCCGTTTCAGTGGTGCAAAGATCTACCCTGGCAGAGGAATCAGATTTGTTCGTGGTGATTCTCAGGTTTTCCTGTTTGCCAACTCGAAATGCAAGAGGTATTTCCACAACAGATTGAAGCCGTCTAAGCTCACATGGACTGCCATGTATAGGAAGCAGCATAAGAAGGATATTGCCCAAGAAGCTGTGAAGAAGAGGCGCCGTGCTACCAAAAAGCCTTACTCTAGATCCATTGTTGGTGCTACCTTGGAAGTTATTCAGAAGAAAAGAACTGAGAAGCCAGAGGTTCGAGATGCTGCTAGAGAAGCTGCCCTCCGTGAAATTAAAGAGAGGGTAAAGAAAACAAAGGATGAGAAGAAGGCCAAGAAGGCAGAAGTTCAGGCAAAGTTACAAAAATCACAAGGCAAAGGCAACCTTGGCGGCAAGGCTGCTGCTCCCAAAGGTCCCAAGCTTGGTGGTGGAGGTGGCAAGCGCTAA 498 0.4719 MVLKTELCRFSGAKIYPGRGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERVKKTKDEKKAKKAEVQAKLQKSQGKGNLGGKAAAPKGPKLGGGGGKR 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00502 165 Gene3D - 69 138 - -
Cca02g00502 165 CDD Ribosomal_L24e_L24 3 56 IPR000988 -
Cca02g00502 165 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 58 - -
Cca02g00502 165 Pfam Ribosomal protein L24e 4 67 IPR000988 -
Cca02g00502 165 PANTHER 60S RIBOSOMAL PROTEIN L24 1 165 IPR000988 -
Cca02g00502 165 MobiDBLite consensus disorder prediction 118 165 - -
Cca02g00502 165 Gene3D Ribosomal protein L24e 3 64 IPR038630 -
Cca02g00502 165 Coils Coil 112 143 - -
Cca02g00502 165 ProSitePatterns Ribosomal protein L24e signature. 10 27 IPR023442 -
Cca02g00502 165 MobiDBLite consensus disorder prediction 118 136 - -
Cca02g00502 165 SMART 4TRASH 8 46 IPR011017 -
Cca02g00502 165 PANTHER 60S RIBOSOMAL PROTEIN L24 1 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00502 Cca-Chr2 10676294 10678513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00502 1 158 Cytoplasmic Ribosomal Protein Gene Family AT2G36620 85.443 1.09e-86 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00502 K02896 - thj:104827494 244.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00502 02 10676294 10678513 Cca02g00502 02 10676294 10678513 ECH
Cca03g02458 03 45665030 45667232 Cca02g00502 02 10676294 10678513 PCT