Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00490 ATGGACACAATGTTGGTGCCTCCATGGCTTGAGCCACTCCTAACCACACCCTTTTTCAATGTGTGTCGGATTCACGGGGCTGCCGCTAAGAGCGAGTGTAACATGTTTTGTCTCGATTGCAATGAGGAAGCATTTTGCTTTTATTGCCGTTCCTCAAGACACAAGGATCACCGAGTCATTCAGATAAGGCGATCTTCATATCACGATGTAGTGAGGGTGGCGGAAATTCAGAAGGTGTTGGACATTAGTGGAGTTCAGACATATGTGATCAACGGTGCCAGAGTTCTGTTTCTGAATGAGAGGCCTCCACCAAAATCTGGAAAAGGAGTAGCTCACATTTGTGAGATTTGTGGCAGAAGCCTCTTGGACCCCTTTCGCTTCTGTTCTTTGGGGTGTAAGCTCGTAGGAATAAAGAGAAATGGGGATACAAAGTTTGCTTTGGAGGGTAAAAATGAGGCATCAACAATGGAGGGTATGTCAAGAAGATCAAACTCTTCAAGGAATGAAGAAGAGGAATTGCGTGAAGGCTCACAACAAGACATGTACCCGGCCACGCCACCACCACTTGCTGCTTCAAACGCAAGGAGAAGAAAAGGAATTCCTCATAGGGCACCTTTTGGCTCATAA 627 0.4625 MDTMLVPPWLEPLLTTPFFNVCRIHGAAAKSECNMFCLDCNEEAFCFYCRSSRHKDHRVIQIRRSSYHDVVRVAEIQKVLDISGVQTYVINGARVLFLNERPPPKSGKGVAHICEICGRSLLDPFRFCSLGCKLVGIKRNGDTKFALEGKNEASTMEGMSRRSNSSRNEEEELREGSQQDMYPATPPPLAASNARRRKGIPHRAPFGS 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00490 208 MobiDBLite consensus disorder prediction 148 208 - -
Cca02g00490 208 MobiDBLite consensus disorder prediction 163 177 - -
Cca02g00490 208 Pfam PLATZ transcription factor 63 134 IPR006734 -
Cca02g00490 208 Gene3D Classic Zinc Finger 17 81 - -
Cca02g00490 208 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 2 207 - -
Cca02g00490 208 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 2 207 - -
Cca02g00490 208 CDD Bbox2 21 62 - -
Cca02g00490 208 SUPERFAMILY B-box zinc-binding domain 16 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00490 Cca-Chr2 10461147 10462957 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Cca02g00490 PLATZ 2.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00490 - - gmx:100779070 369.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02445 03 45533006 45535176 Cca02g00490 02 10461147 10462957 PCT