Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00484 ATGGATTCCCAAAACGACGCCGTCAAACCTCCGCACCACCGAGTGAACGGCTTCCTCGTCTACACTCGCCGGAAGAGGACCCTCCATTCCGATAATGACGCCGCCAAGAGGCTCCAAACCGACCAAATTAAGGTCGAACCTCGCCACGACGCCGTTTTCGCTGGAGTTGGAGTTTCCAATTCAAATGCCGAGGAACTCACCAATGTGGAATTGAAGAAGCTCATCGTCGTCCACAAGAAGCCCTTCACCGTCAAGGAGCTTTTCGACACTGGCTTGCTCGATGGGGTTCCCGTCGTTTACATCGGTTGCAAGAAGGATTCAACTTCGGAATTGCGGGGTGTCATCAAAAATGGGGGGATCTTGTGCTCGTGCCGTCTGTGCAATGGATGCAGGGTTATTCCACCTTCCCAATTCGAGATTCATGCATGCAACATATATAAGAGGGCAGCACAATATATTTGCCTTGAAAATGGCAAGAGCCTGCTTGAACTATTGAGAGCATGCAGGGCAGCTCCGTTACATACTTTGGAGGCGACCATTCAAAATTTTATTAGTTCTCCGCCAGAGGAGAAATATTTTACTTGCAAAAGTTGCAGAGGGTGTTTTCCTTCTTCCAATGTGGAAAGAGGGGGGCTTTTGTGTCTATCTTGCGTGGAATCAAGGAAATCTGAAAACAGTTCTATTCATGCTGTTGGAAAAAGAATCAGGTCCCCTCGGCCAGTATTATTCTCCCGTTCATGTTCATGTTGTACTTCTGAACTCTGTATATCTTCGCAAACAAAGAGACACTGGAAGACAAGAACAAAGTCATCAAAACTGTTGGTAAAATTAAAGACTTCTCCAATTACTTCAAAGGATTTATCTTCACAAAATAAAAGTCAGTGGAGGATCTCTAAAAGGCATCAACGAATACATAAATTAATTTTTGAAGAGGATGGATTGCCTAATGGAGCTGAAGTAGCTTATTATGCACGTGGACAGAAATTGCTTGAGGGTATCAAAACACGCTCTGGAATTGTTTGTCGATGCTGCAACACTGAGATCAGCCCCTCACAGTTTGAGGTCCATGCAGGCTGGGCTTCTCGCAGGAAACCTTATGCATACATCTACACATCAAATGGGGTGTCACTCCATGAGTTGGCAATATTTCTGTCCAAAGATCACAAATGCACTACAAAGCAGAATGATTATGTATGTGCTGTTTGTTGGGATGGTGGAAACCTGTTGCTTTGCGATGGATGTCCAAGGGCATTTCATAAAGAATGTGCATCTGTATCAAGTATTCCCCGGGGAGAGTGGTACTGTCAAATTTGTCAACACATGTTCCTCAGAGAAAAGCCTGCGTCATACAATGCTGATGCTGTGGCAGCTGGAAGGGTAGAAGGTGTTGATCCTATTGAGCAGATTGCCAAGAGATGCATTCGCATAGTAAAAGACATAGGAGCTGAGATTGGTGGATGTGTTTTATGCAGGGGTTCTGACTTCAGCAGATCAGGGTTTGGTCCTCGCACAATTATAATCTGTGATCAGTGTGAAAAGGAATATCATGTTGGCTGCTTGAGGGATCATAAGATGGCATATTTGAAGGAGTTGCCAGAAGGGGATTGGCTTTGTTGCAATGATTGCACAAAAATACATGCTACTTTGGAGAATCTCCTGGTTAGGGTGGCTGAGAGACTCCCTGAATCTCTTTTGGATGTTATAAAGAAGAAGCAAGTGGAAAGATGTTTAGAACCCCTTAATGAGATTGATGTAAGATGGAAACTTCTTAATGGAAAAATTGCGTCTCCTGAAACTAGGCCATTGCTTTTGGAGGCAGTGTCCATGTTTCATGAATGCTTTGATCCTATAGTTGAGGCAGCTGCTGGACGTGACCTTATTCCTGCCATGGTTTATGGAAGGAATTTGCAGACTCAGGATTTTGGAGGAATGTATTGTGCATTATTGATTGTCAATTCATCTGTGGTATCCGCGGGCATGCTTCGAATATTTGGTAAAGATATTGCGGAACTCCCTTTAGTTGCAACAAGATATAAGAACCGTGGAAAGGGCTACTTTCAAACACTTTTTTCGTGCATTGAGAGGCTGCTGGCTTTCATGAATGTAAAAAATCTTGTGCTACCGGCTGCAGAAGGAGCAGAATCTATATGGACGGAAAAATTTGGGTTTAGCAAGATGAAACCCGACCAGATTTCCAACTATAGAATGAACTGCCATCAGATTATGGCATTCAAAGGGACAATTATGCTTCATAAAACGGTGCCTCGATGTCGGGTCATCAATACTCAATCAAGAGAAGTCTGTAAACAAGAAAGTCATTCGTGA 2325 0.4374 MDSQNDAVKPPHHRVNGFLVYTRRKRTLHSDNDAAKRLQTDQIKVEPRHDAVFAGVGVSNSNAEELTNVELKKLIVVHKKPFTVKELFDTGLLDGVPVVYIGCKKDSTSELRGVIKNGGILCSCRLCNGCRVIPPSQFEIHACNIYKRAAQYICLENGKSLLELLRACRAAPLHTLEATIQNFISSPPEEKYFTCKSCRGCFPSSNVERGGLLCLSCVESRKSENSSIHAVGKRIRSPRPVLFSRSCSCCTSELCISSQTKRHWKTRTKSSKLLVKLKTSPITSKDLSSQNKSQWRISKRHQRIHKLIFEEDGLPNGAEVAYYARGQKLLEGIKTRSGIVCRCCNTEISPSQFEVHAGWASRRKPYAYIYTSNGVSLHELAIFLSKDHKCTTKQNDYVCAVCWDGGNLLLCDGCPRAFHKECASVSSIPRGEWYCQICQHMFLREKPASYNADAVAAGRVEGVDPIEQIAKRCIRIVKDIGAEIGGCVLCRGSDFSRSGFGPRTIIICDQCEKEYHVGCLRDHKMAYLKELPEGDWLCCNDCTKIHATLENLLVRVAERLPESLLDVIKKKQVERCLEPLNEIDVRWKLLNGKIASPETRPLLLEAVSMFHECFDPIVEAAAGRDLIPAMVYGRNLQTQDFGGMYCALLIVNSSVVSAGMLRIFGKDIAELPLVATRYKNRGKGYFQTLFSCIERLLAFMNVKNLVLPAAEGAESIWTEKFGFSKMKPDQISNYRMNCHQIMAFKGTIMLHKTVPRCRVINTQSREVCKQESHS 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00484 774 Pfam Tify domain binding domain 333 382 IPR032308 -
Cca02g00484 774 Pfam Tify domain binding domain 113 168 IPR032308 -
Cca02g00484 774 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 384 465 IPR013083 -
Cca02g00484 774 SMART PHD_3 486 543 IPR001965 -
Cca02g00484 774 SMART PHD_3 398 439 IPR001965 -
Cca02g00484 774 ProSitePatterns Zinc finger PHD-type signature. 399 438 IPR019786 -
Cca02g00484 774 Pfam PHD-finger 399 439 IPR019787 -
Cca02g00484 774 PANTHER AUTOIMMUNE REGULATOR 41 760 - -
Cca02g00484 774 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 485 545 IPR013083 -
Cca02g00484 774 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 41 760 - -
Cca02g00484 774 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 642 727 IPR016181 -
Cca02g00484 774 SUPERFAMILY FYVE/PHD zinc finger 481 540 IPR011011 -
Cca02g00484 774 ProSiteProfiles Zinc finger PHD-type profile. 396 441 IPR019787 -
Cca02g00484 774 SUPERFAMILY FYVE/PHD zinc finger 384 441 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00484 Cca-Chr2 10298962 10311230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00484 73 761 PHD Transcription Factor Family AT2G36720 50.000 0.0 747
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Cca02g00484 TDBD 7.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00484 - - gmx:100816654 1367.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02441 03 45460248 45473631 Cca02g00484 02 10298962 10311230 PCT