Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00461 ATGGCAGTTCCAGGGAGGCGCAACGGCATGAACGACGACGAAGAGGACTTAGACGACAACGCCCTCTTCGAAGAACCACCCTTCATTCAAGACGACACCCCCACTCCTCCTCATCTCCGCGACCTCTCCGCCGCCGCTCAGCTCGGCGACCTCCAcgccctccgcctcgctctcgATAACTTGACTGGTAGTATTGATGAGCCAGTGGAGGATGGGGATACTGCTCTTCATTTGACATGTTTATATGGCCATTTGTCATGCGTCCAGCTGCTACTAGAAAGAGGAGCAAACATTGAGGCTAAGGATGAAGATGGTGCAATTCCTTTGCACGATGCTTGTGCTGGAGGATATACAGAGATAGTGCAACTGCTACTTAACAGAGCTAATGGTGCAGAACATATAAAAAGAATGTTAGAATCGGTTGATTCTGAGGGTGATACTCCTCTCCATCATGCTGCAAGAGGTGAGCATGTTGATGTAATTAGGTTGTTGCTGTCTAATGGAGCATCTTTCAGAAAGGCAAACTTATACGGAAAGACACCGGCAGATTTGCCTGAACAGGACACAGATGCTAGGAGGCTGCTTGAAGCTGCCGCTACTGCCATGGCATGCTAA 615 0.4732 MAVPGRRNGMNDDEEDLDDNALFEEPPFIQDDTPTPPHLRDLSAAAQLGDLHALRLALDNLTGSIDEPVEDGDTALHLTCLYGHLSCVQLLLERGANIEAKDEDGAIPLHDACAGGYTEIVQLLLNRANGAEHIKRMLESVDSEGDTPLHHAARGEHVDVIRLLLSNGASFRKANLYGKTPADLPEQDTDARRLLEAAATAMAC 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00461 204 ProSiteProfiles Ankyrin repeat profile. 144 176 IPR002110 GO:0005515
Cca02g00461 204 PANTHER SOWAH (DROSOPHILA) HOMOLOG 1 203 - -
Cca02g00461 204 ProSiteProfiles Ankyrin repeat profile. 104 136 IPR002110 GO:0005515
Cca02g00461 204 ProSiteProfiles Ankyrin repeat region circular profile. 144 170 - -
Cca02g00461 204 PANTHER SOWAH (DROSOPHILA) HOMOLOG 1 203 - -
Cca02g00461 204 ProSiteProfiles Ankyrin repeat region circular profile. 104 127 - -
Cca02g00461 204 ProSiteProfiles Ankyrin repeat region circular profile. 71 103 - -
Cca02g00461 204 Pfam Ankyrin repeat 71 102 IPR002110 GO:0005515
Cca02g00461 204 ProSiteProfiles Ankyrin repeat profile. 71 103 IPR002110 GO:0005515
Cca02g00461 204 SUPERFAMILY Ankyrin repeat 42 184 IPR036770 -
Cca02g00461 204 Gene3D - 36 203 IPR036770 -
Cca02g00461 204 SMART ANK_2a 104 133 IPR002110 GO:0005515
Cca02g00461 204 SMART ANK_2a 144 173 IPR002110 GO:0005515
Cca02g00461 204 SMART ANK_2a 71 100 IPR002110 GO:0005515
Cca02g00461 204 Pfam Ankyrin repeats (3 copies) 104 172 IPR002110 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00461 64 187 Ion Channels AT2G25600 32.680 1.23e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00461 - - gmx:100527544 362.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00461 02 9785972 9788283 Cca02g00461 02 9785972 9788283 ECH