Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00460 atgcagctccaacaagaaTTTCTCGTGGTTTCCAAGGATGACACTCAAATGATCATCAAAGGAAAACGCACCAAGCGTCAAAGGGCACCATCCCCTCTTAGGCTACTCATGCCTAATTCAACCTCAAGTAGCACCAACAATTCCAATTCCATTGATAGcaccacaaccaccaccaccaTTGAATTGAGACAAGATGAAGACATGGCCAATTGTCTCATTCTTCTGGCTCAAGGCAGGCACCACGTGACAGCACCGGCATCACGTCATGATGATAACGAGAACAACAACGATAACAATGATGATAACAAGTCAACAAGGCTATACCTTTACCAGTGCAAGACTTGCAACAGATGCTTCCCTTCATTCCAAGCCCTTGGTGGACACAGAGCCAGTCACAAGAAGCCTAGGCAAAACGGCACTTTCTCAGAAGCAGTTACAACTTTTGAGAACAATATTGAAGAGAATATTAATGATCGTTATGATCCCACCACAAGTACCACCCTCTCCTTGAAAATACCAAACACCAGCACTGGAACTGTTTCTACAACGAAAGCCAAAGCTCACGAGTGCTCTATCTGTGGTGCTGAGTTCTCGTCAGGGCAAGCCTTGGGGGGCCACATGAGGAGGCACAGAAGTCTTGTGCATGCTTCCATGACAACGTCTATGAGTGGTGGAAATGTTGTTGCTGGTGGTAGTGGTAGCCATGAATATCAAGAAGCCAAAAAACCCTTCAAGTTGGACTTGAATCTTCCAGCACCCGATGATGATCATAGAGAATCCAAGTTTTCTTTTCAGCAAAGAGAAAAAGTGATTGTCTTTTCTAAATCTTCTTTGGTGGATTGCCATTACTGA 852 0.4237 MQLQQEFLVVSKDDTQMIIKGKRTKRQRAPSPLRLLMPNSTSSSTNNSNSIDSTTTTTTIELRQDEDMANCLILLAQGRHHVTAPASRHDDNENNNDNNDDNKSTRLYLYQCKTCNRCFPSFQALGGHRASHKKPRQNGTFSEAVTTFENNIEENINDRYDPTTSTTLSLKIPNTSTGTVSTTKAKAHECSICGAEFSSGQALGGHMRRHRSLVHASMTTSMSGGNVVAGGSGSHEYQEAKKPFKLDLNLPAPDDDHRESKFSFQQREKVIVFSKSSLVDCHY 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00460 283 ProSiteProfiles Zinc finger C2H2 type domain profile. 110 137 IPR013087 -
Cca02g00460 283 Pfam C2H2-type zinc finger 187 212 - -
Cca02g00460 283 Pfam C2H2-type zinc finger 110 135 - -
Cca02g00460 283 MobiDBLite consensus disorder prediction 34 56 - -
Cca02g00460 283 PANTHER ZINC FINGER, C2H2-LIKE PROTEIN-RELATED 4 282 - -
Cca02g00460 283 PANTHER ZINC FINGER PROTEIN ZAT5 4 282 - -
Cca02g00460 283 Gene3D Classic Zinc Finger 108 210 - -
Cca02g00460 283 MobiDBLite consensus disorder prediction 83 102 - -
Cca02g00460 283 MobiDBLite consensus disorder prediction 22 56 - -
Cca02g00460 283 SMART c2h2final6 110 132 IPR013087 -
Cca02g00460 283 SMART c2h2final6 188 210 IPR013087 -
Cca02g00460 283 SUPERFAMILY beta-beta-alpha zinc fingers 109 210 IPR036236 -
Cca02g00460 283 ProSiteProfiles Zinc finger C2H2 type domain profile. 188 210 IPR013087 -
Cca02g00460 283 MobiDBLite consensus disorder prediction 83 100 - -
Cca02g00460 283 ProSitePatterns Zinc finger C2H2 type domain signature. 112 132 IPR013087 -
Cca02g00460 283 ProSitePatterns Zinc finger C2H2 type domain signature. 190 210 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00460 Cca-Chr2 9756771 9757766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00460 17 283 C2H2 Transcription Factor Family AT5G04390 35.933 5.36e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca02g00460 zf-C2H2_6 9.5e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00460 - - gmx:100815595 381.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00460 02 9756771 9757766 Cca02g01901 02 38354083 38355761 ECH
Cca02g00460 02 9756771 9757766 Cca02g00460 02 9756771 9757766 ECH
Cca02g00460 02 9756771 9757766 Cca10g00562 10 6108652 6109548 ECH
Cca03g02415 03 45233182 45234310 Cca02g00460 02 9756771 9757766 PCT