Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00459 ATGGCGTTCCGCAACACCATAGTCCGCAGAGCCCAAGATGCCGCACACCGCGACACCTGGAGAGCCACACTCTCCGAATTCATCTCCACTCTCATCTTCGTCTTCGCCGCCTCCGGCTCCTCCCTCGCTGTCAACAGACTCACCGTCGACAAGCCCGCCGCCTCCTCATCGCcgccctcgcccaagccttctccctatccgttgccgtcgccatcAGCACCAAAATCTCCGGCGGCCATTCAACCGCCAGATCTTCATCCAACGGAGGATGGCGTTCCGCAACACCATAGTCCGCAGAGCCCAAGATGCCGCACACCGCGACACCTGGAGAGCCACACTCTCCGAATTCATCTCCACTCTCATCTTCGTCTTCGCCGCCTCCGGCTCCTCCCTCGCTGTCAACAGACTCACCGTCGACAAGCCCGCCGCCTCCTCATCGCcgccctcgcccaagccttctccctatccgttgccgtcgccatcAGCACCAAAATCTCCGCCGGCCATGTCACCCCCGCCGTCTCCTTCGGCGCCTTCATCGGCGGCAACCTCACCGTGCTCCGCTGCTTCCTCTTCTGGATCGCTCAGCTCCTCGGCTCCATCGCCGCCTGCTTCCTCCTCAAACTCGCCACCGCCGGACAGAGTGTAGCAGTTATTGGACTTAGTGGTGGAGTGAGGGCGGGGAAAGCGGtggtgttggagattgtgatgacgtttgggttggtgttCGCGGTGTACGCCACCAGCGTTGACCCCAGGAGCAGGAGGAAGGATGGCTTGGTAAATATAGCGCCTATTGTGATTGGATTCATGGTTGGAGCCAATGTTTTGGTGGCTGGGCCTTTCGATGGGGCCTCCATGAACCCCGCTGCGGCTTTTGGGCCTGCACTCGTCACCTGGACTTGGAAGAACCATTGGGTTTACTGGGTTGGACCTCTCATTGGTGGTGGCCTCGCTGGCTTTTCTTACGAGCTGATCTTTGTTAGCCACACCCGTCAAAGGTGGCGCACAACTTATTAA 1020 0.5245 MAFRNTIVRRAQDAAHRDTWRATLSEFISTLIFVFAASGSSLAVNRLTVDKPAASSSPPSPKPSPYPLPSPSAPKSPAAIQPPDLHPTEDGVPQHHSPQSPRCRTPRHLESHTLRIHLHSHLRLRRLRLLPRCQQTHRRQARRLLIAALAQAFSLSVAVAISTKISAGHVTPAVSFGAFIGGNLTVLRCFLFWIAQLLGSIAACFLLKLATAGQSVAVIGLSGGVRAGKAVVLEIVMTFGLVFAVYATSVDPRSRRKDGLVNIAPIVIGFMVGANVLVAGPFDGASMNPAAAFGPALVTWTWKNHWVYWVGPLIGGGLAGFSYELIFVSHTRQRWRTTY 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00459 339 PRINTS Major intrinsic protein family signature 269 291 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca02g00459 339 PRINTS Major intrinsic protein family signature 306 326 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca02g00459 339 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca02g00459 339 Gene3D Glycerol uptake facilitator protein. 4 337 IPR023271 -
Cca02g00459 339 PANTHER AQUAPORIN TIP1-1 2 55 - -
Cca02g00459 339 SUPERFAMILY Aquaporin-like 14 334 IPR023271 -
Cca02g00459 339 MobiDBLite consensus disorder prediction 56 81 - -
Cca02g00459 339 PANTHER AQUAPORIN-8 2 55 IPR034294 -
Cca02g00459 339 PANTHER AQUAPORIN-8 141 337 IPR034294 -
Cca02g00459 339 PANTHER AQUAPORIN TIP1-1 141 337 - -
Cca02g00459 339 Pfam Major intrinsic protein 16 323 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca02g00459 339 MobiDBLite consensus disorder prediction 51 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00459 Cca-Chr2 9744566 9748577 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00459 1 48 Major Intrinsic Protein MIP AT2G36830 52.083 6.27e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00459 K09873 - gmx:100820403 297.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02414 03 45212839 45213674 Cca02g00459 02 9744566 9748577 PCT