Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00456 ATGCTCCTAACACAAACAACATGCATTCTCCTTTTCTCCATTGTGGCCTCATTTTTACCCCATGCAACACCAATGCTCAACCTCACACTCCCTGGCCAACATCCAGACCCCGAAGCCGTTGCCCTACAAATTCACAGGATGGTGAATGCTTCAATGGCAAGAAGGGAAATGCTGGGAGTGTCAGTGTCAGAGAAAGACGTGGCATCCTGCTTAACAGGGAACCCCATCGACGACTGCTGGAAATGCGACCCAAATTGGGCGAACAACAGACAGAGGCTAGCCGATTGTGCAATTGGGTTCGGGCAGAACGCAAAGGGAGGCAAAGGTGGGGAATTTTACATAGTCACGGATTCCTCCGACGAGGACCCTGTGAACCCAAAACCCGGAACCCTCCGATATGCAGTGATACAGAATGAGCCACTGTGGATCGTGTTCCCCACTAACATGATGATTAAGCTCTCTCAGGAACTCATTTTCAACAGCTACAAGACCATCGACGGCCGCGGAGCTGACGTCCACATCGTAGGCGGAGGATGCATCACTCTTCAGTATATTAGTAATGTCATCATACACAACATCCACATCCACCATTGCCATCCCTCCGGGAATGCTAACGTGCGGTCGAGTCCAGAGCACTACGGGTACCGCACGGAATCGGACGGCGACGGGATCTCGATATTCGGGTCGAACAACATCTGGATCGACCACTGCACGCTGTCCCGGTGCAAGGACGGTCTAATCGACGCAGTGATGGGGTCGACGGGGATAACAATCTCGAACAACCACTTCTCCCACCACAACGACGTGATGCTGTTGGGGCACAGCGACCAGTACCTGCCGGACTCCGCCATGCAGGTCACCATCGCCTTCAACCACTTCGGCGACAACCTGGTCCAGCGCATGCCACGTTGCAGGCTGGGCTACATCCACGTGGTGACCAAGAGGCTGGACGCCCGAGAAGGAGACTGGACTGCATGGAATTGGAGGTCCCAAGGAGATGTTATGTTCAACGGAGCTTTCTTTGTTGCTTCTGGCGCTGTTGCTCAGCCTAACTACCGAGATGCTTACAGCGTTGAACCTAAGTCCGTTGACCGGATTTCGCTCTTGACTATGTCTGCTGGTGTTCTTGGTGTTGCCAGGGACAATAATCTTGGAATGTGGACCAGAGGAAGCAATGATTATGATGGTGTTTCTTTTTCAGATTTCGGTCCTCACTACACGGACGACATGTCCCCTAGTACAATGCAGttcctaccttcatcttttttcattcttctctctgcattcttctctcATATAACAACAACATTTCTATAA 1317 0.5019 MLLTQTTCILLFSIVASFLPHATPMLNLTLPGQHPDPEAVALQIHRMVNASMARREMLGVSVSEKDVASCLTGNPIDDCWKCDPNWANNRQRLADCAIGFGQNAKGGKGGEFYIVTDSSDEDPVNPKPGTLRYAVIQNEPLWIVFPTNMMIKLSQELIFNSYKTIDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNANVRSSPEHYGYRTESDGDGISIFGSNNIWIDHCTLSRCKDGLIDAVMGSTGITISNNHFSHHNDVMLLGHSDQYLPDSAMQVTIAFNHFGDNLVQRMPRCRLGYIHVVTKRLDAREGDWTAWNWRSQGDVMFNGAFFVASGAVAQPNYRDAYSVEPKSVDRISLLTMSAGVLGVARDNNLGMWTRGSNDYDGVSFSDFGPHYTDDMSPSTMQFLPSSFFILLSAFFSHITTTFL 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00456 438 PANTHER PECTATE LYASE 5 312 - -
Cca02g00456 438 PANTHER PECTATE LYASE 312 398 - -
Cca02g00456 438 SUPERFAMILY Pectin lyase-like 53 364 IPR011050 -
Cca02g00456 438 PANTHER PECTATE LYASE 18-RELATED 5 312 IPR045032 GO:0030570
Cca02g00456 438 PANTHER PECTATE LYASE 18-RELATED 312 398 IPR045032 GO:0030570
Cca02g00456 438 Gene3D - 73 377 IPR012334 -
Cca02g00456 438 PRINTS Pollen allergen Amb family signature 96 113 IPR018082 -
Cca02g00456 438 PRINTS Pollen allergen Amb family signature 120 145 IPR018082 -
Cca02g00456 438 PRINTS Pollen allergen Amb family signature 156 172 IPR018082 -
Cca02g00456 438 PRINTS Pollen allergen Amb family signature 220 241 IPR018082 -
Cca02g00456 438 PRINTS Pollen allergen Amb family signature 300 319 IPR018082 -
Cca02g00456 438 Pfam Pectate lyase 157 313 IPR002022 -
Cca02g00456 438 SMART amb_all 148 347 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00456 Cca-Chr2 9663589 9666162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00456 2 438 Polysaccharide Lyase AT3G53190 61.191 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00456 K01728 - gmx:100815062 738.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00456 02 9663589 9666162 Cca02g00456 02 9663589 9666162 ECH
Cca03g02411 03 45181239 45184174 Cca02g00456 02 9663589 9666162 PCT