Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00455 ATGCAAGGAGAACATTTGCGTAAAGGGACTTGGCTTCAAGAGGAAGATGAACAATTGACCAACTTTGTGGCTCTACTTGGGGAACGAAGATGGGATTCCCTTGCCAAATTAGCTGGCTTAAGGAGAAGTGGTAAAAGTTGTAGGTTAAGGTGGATGAACTATCTTCGTCCAAATCTCAAGCATGGTCCTTTTAGTGGTGAAGAAGAGAAACTTATTGTTCAGCTTCAGCAGCAATTGGGTAACAAGTGGGCAAAGATTGCTCGGAAACTTCCAGGAAGAACTGACAATGAAATCAAGAATTACTGGAGAACTCATTTAAGAAAAAGAGCTCCTCAAGTTCGACAAGAAGGAAATTTCAAGTATAAATTAGAAATTGAAACACGAGATTTCAACCAGAAAAGCATTGATATGGTTTCCATCACAGAAAAAGTTTGTTGTGAAGATAGTGAGTGGGAGACAAAGGATAGCTCCATAGACACTTTACCCTTATCAGATTGGGAATTGAGAAGCTCACCCTATGAGACTAGGATATTGGATTGGATAATGCAAAATGAATTTGGTGAGAAAGAAGTAGAACAAGATTGTAATAGCACAGGAACATTCAACTACAGTCCTCAAGAATTTGCAGAGGGATGTGACTCATGGGATTTTTCAGGTTCCTTATGGGATTTGAACTAA 678 0.3923 MQGEHLRKGTWLQEEDEQLTNFVALLGERRWDSLAKLAGLRRSGKSCRLRWMNYLRPNLKHGPFSGEEEKLIVQLQQQLGNKWAKIARKLPGRTDNEIKNYWRTHLRKRAPQVRQEGNFKYKLEIETRDFNQKSIDMVSITEKVCCEDSEWETKDSSIDTLPLSDWELRSSPYETRILDWIMQNEFGEKEVEQDCNSTGTFNYSPQEFAEGCDSWDFSGSLWDLN 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00455 225 PANTHER MYB TRANSCRIPTION FACTOR 3 225 - -
Cca02g00455 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Cca02g00455 225 Gene3D - 1 61 - -
Cca02g00455 225 CDD SANT 63 106 IPR001005 -
Cca02g00455 225 SUPERFAMILY Homeodomain-like 6 102 IPR009057 -
Cca02g00455 225 Gene3D - 63 123 - -
Cca02g00455 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Cca02g00455 225 SMART sant 7 57 IPR001005 -
Cca02g00455 225 SMART sant 60 108 IPR001005 -
Cca02g00455 225 CDD SANT 10 55 IPR001005 -
Cca02g00455 225 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 225 - -
Cca02g00455 225 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Cca02g00455 225 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Cca02g00455 225 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Cca02g00455 225 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00455 Cca-Chr2 9655617 9657396 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00455 4 110 MYB Transcription Factor Family AT5G59780 63.551 6.75e-47 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca02g00455 Myb_DNA-binding 1.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00455 K09422 - gmx:100783472 380.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00455 02 9655617 9657396 Cca02g00455 02 9655617 9657396 ECH