Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00450 ATGTCTACCTCTGCAGCTTCTCTCGCACTTCCCACACTCACTCTCCGAACCAGACAACCTCTGTGTTCCCCGCAATGCTTCTCCTCCCTCTCCCTCGCCCCCAACTCCAAACCCATCTCCATTTCCGCAGTTTTCCTCAAGCCAACAACGTTGTCGTTGTCCTCTCGCTTCGTTCCACGTGTCGCTGTTTCGTCGGAGCTGGAGCAGGAGGAGGACACTTTCAGCGACGGCGACGGCGACAGCGACAGCCCCAGTTTCTCCCCCGACCTTAAGCTCTTCGTCGGAAACCTTCCCTTCAGCGTCGACAGCGCGCAGCTCGCCGAGCTCTTCGAGAGCGCCGGGAATGTGGAGGTCGTAGAGGTGATTTATGATAAGACCACTGGGAGGAGCAGGGGGTTTGGGTTTGTGACCATGTCTTCGGTTGAGGAAGTTGAAGCGGCGGCTCAGCAGTTCAATGGCTATGAACTGGAGGGAAGGGCGTTGAGAGTGAATGCTGGGCCACCCCCTTCCCGGAGTGAGAGTTCTCCTCGTTTTAGAGGTTCTTCCGGTCCCAGAGGAGGTGGTGGTGGTTTTTCAGATAGTGAAAACCGTGTTCATGTAGGTAATCTTGCTTGGGGTGTTGACAATTTAGCACTCGAGTCATTGTTCCGGGAACAAGGAAAGGTCTTGGAAGCTAGGGTAATCTATGACAGGGAAAGTGGACGATCAAGAGGATTTGGATTTGTGACTTACAGTAGCCCTGATGAGGTCAACAGTGCAATTCAGTCCTTGGATGGTGTGGACTTGAATGGCAGAGCTATACGAGTCTCAATGGCAGATTCTAAGCCCAAGCGGTTTTAA 840 0.5345 MSTSAASLALPTLTLRTRQPLCSPQCFSSLSLAPNSKPISISAVFLKPTTLSLSSRFVPRVAVSSELEQEEDTFSDGDGDSDSPSFSPDLKLFVGNLPFSVDSAQLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRALRVNAGPPPSRSESSPRFRGSSGPRGGGGGFSDSENRVHVGNLAWGVDNLALESLFREQGKVLEARVIYDRESGRSRGFGFVTYSSPDEVNSAIQSLDGVDLNGRAIRVSMADSKPKRF 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00450 279 SMART rrm1_1 91 164 IPR000504 GO:0003723
Cca02g00450 279 SMART rrm1_1 197 270 IPR000504 GO:0003723
Cca02g00450 279 SUPERFAMILY RNA-binding domain, RBD 83 193 IPR035979 GO:0003676
Cca02g00450 279 Gene3D - 194 278 IPR012677 -
Cca02g00450 279 Gene3D - 61 193 IPR012677 -
Cca02g00450 279 PANTHER 29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 1 279 - -
Cca02g00450 279 MobiDBLite consensus disorder prediction 162 193 - -
Cca02g00450 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 274 IPR000504 GO:0003723
Cca02g00450 279 PANTHER OS02G0815200 PROTEIN 1 279 - -
Cca02g00450 279 CDD RRM_HP0827_like 91 164 - -
Cca02g00450 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 162 IPR000504 GO:0003723
Cca02g00450 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 268 IPR000504 GO:0003723
Cca02g00450 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 168 IPR000504 GO:0003723
Cca02g00450 279 SUPERFAMILY RNA-binding domain, RBD 193 278 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00450 Cca-Chr2 9532052 9534896 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00450 92 278 Eukaryotic Initiation Factors Gene Family AT1G49760 27.273 6.57e-11 60.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00450 02 9532052 9534896 Cca02g00450 02 9532052 9534896 ECH
Cca03g02325 03 44233880 44241457 Cca02g00450 02 9532052 9534896 PCT