Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00447 ATGGCAGCTAATGGCCACGTTCAAGCTGCAGACACTTTCTGCTTAAGCAATGGCGCCGTCGCTGCGGCAGACCCCTTGAACTGGGCCTCTGCGGCCGAGGCCCTCAAGGGGAGCCACCTCGACGAGGTCAAGCGCATGGTGGCTGAGTTCCGCAAGCCGCTCGTCCGCCTCGGCGGAGAAACGCTCACCATCTCGCAGGTGGCGGCGATCGCTGCCCACGACCAGGGAGTCAAGGTCGAGCTCGCTGAGTCCGCCAGGGCCGGCGTTAAGGCCAGCAGCGACTGGGTCATGGACAGCATGAACAAGGGCACCGACAGCTACGGCGTCACCACCGGCTTCGGCGCCACCTCCCACCGTCGCACCAAACAAGGTGGTGCCTTGCAGAAGGAGCTAATTAGGTTTTTGAATGCTGGAATATTTGGCAATGGTACAGAGTCCAACTGTACACTACCCCACACTGCAACAAGAGCAGCTATGCTAGTAAGGATCAACACACTTCTTCAAGGGTACTCAGGCATTAGGTTTGAAATCTTGGAGGCTATCACAAAGCTTCTTAACAACAACATTACCCCATGCTTGCCACTTAGGGGTACAATCACAGCTTCTGGTGATCTTGTTCCTTTGTCTTACATTGCCGGTTTGCTAACTGGTAGACCAAACTCCAAGGCTGTTGGACCCTCTGGGGAGATTCTGAATGCCAAGGAAGCCTTTGAAGTGGCCAACATTGGCTCTGAGTTCTTTGAGTTGCAACCTAAGGAAGGGCTTGCCCTTGTGAATGGCACTGCTGTTGGTTCTGGATTGGCTTCCATTGTACTCTTTGAAGCAAACGTCCTTGCTGTCTTGTCTGAAGTTATTTCAGCGGTGTTTGCTGAAGTCATGCAAGGGAAGCCTGAGTTCACTGACCATTTGACTCACAAGCTGAAGCACCACCCTGGACAGATTGAGGCTGCTGCTATCATGGAACACATTTTGGAAGGAAGCTCTTACATTAAAGCAGCTAAGAAGTTGCATGAGATAGATCCTTTGCAAAAGCCTAAACAAGACAGATATGCCCTTAGGACTTCACCACAATGGCTTGGTCCTCAAATCGAAGTGATCAGATTTTCCACCAAGTCAATTGAGAGAGAGATTAACTCGGTCAATGACAACCCTTTGATTGATGTGTCAAGGAACCAGGCCTTGCATGGTGGTAACTTCCAAGGAACTCCCATTGGTGTCTCCATGGACAACACCCGTTTGGCTCTTGCATCAATTGGCAAACTCATGTTTGCTCAATTCTCGGAGCTTGTCAATGACTACTACAACAATGGTTTGCCTTCAAATCTCACTGCCAGCAGAAACCCCAGCTTGGATTATGGTTTCAAGGGAGCAGAAATTGCCATGGCATCTTACTGTTCTGAACTCCAATACTTGGCAAACCCGGTAACTAGCCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAACTCTCTGGGGTTGATTTCATCTAGAAAAACACACGAAGCCATTGAGATCCTCAAGCTTATGTCTTCCACTTTCCTCATTGCACTTTGCCAAGCCATAGACTTGAGGCATTTGGAGGAGAATTTGAAGAACACTGTGAAGAATGTTGTGAGCCAAGTGGCCAAGAGGACTCTCACCACAGGTGTGAATGGAGAGCTTCACCCTTCAAGGTTTTGCGAGAAGGACTTGCTGAAAGTTGTTGACAGGGAGTACACATTTGCCTACATCGATGATCCCTGCAGTGGCACATACCCTTTGATGCAAAAGCTAAGGCAAGTGCTTGTGGACTATGCATTGGCCAACGGGGAGAGCGAGAAAAACACCAACACTTCAATCTTCCAAAAGATTACAACATTTGAGGAGGAGTTGAAGGCCCTCTTGCCTAAGGAGGTGGAAGGTGCGAGGGTTGCATATGAGAATGGCCAGTGTGCAATTCCCAACAAGATCAAGGAGTGTAGGTCTTACCCATTGTACAAGTTTGTGAGAGAGGAGTTGGGGACAGCGTTGCTAACTGGAGAAAGGGTTATCTCACCGGGTGAGGAGTGTGACAAACTGTTCACTGCCATGTGCCAAGGGAAAATCATTGATCCTATGTTGGAATGCCTTGGAGAGTGGAATGGTGCTCCTCTTCCTATCTGTTAG 2148 0.4944 MAANGHVQAADTFCLSNGAVAAADPLNWASAAEALKGSHLDEVKRMVAEFRKPLVRLGGETLTISQVAAIAAHDQGVKVELAESARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESNCTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEILNAKEAFEVANIGSEFFELQPKEGLALVNGTAVGSGLASIVLFEANVLAVLSEVISAVFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILEGSSYIKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFSTKSIEREINSVNDNPLIDVSRNQALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDYYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTHEAIEILKLMSSTFLIALCQAIDLRHLEENLKNTVKNVVSQVAKRTLTTGVNGELHPSRFCEKDLLKVVDREYTFAYIDDPCSGTYPLMQKLRQVLVDYALANGESEKNTNTSIFQKITTFEEELKALLPKEVEGARVAYENGQCAIPNKIKECRSYPLYKFVREELGTALLTGERVISPGEECDKLFTAMCQGKIIDPMLECLGEWNGAPLPIC 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00447 715 PANTHER HISTIDINE AMMONIA-LYASE 19 715 IPR001106 -
Cca02g00447 715 Gene3D - 15 261 IPR024083 -
Cca02g00447 715 Gene3D - 528 649 IPR023144 -
Cca02g00447 715 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 197 213 IPR022313 GO:0016841
Cca02g00447 715 Gene3D Fumarase/aspartase (Central domain) 262 710 - -
Cca02g00447 715 CDD PAL-HAL 60 525 IPR001106 -
Cca02g00447 715 Pfam Aromatic amino acid lyase 62 542 IPR001106 -
Cca02g00447 715 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 19 715 - -
Cca02g00447 715 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 24 704 IPR005922 GO:0005737|GO:0006559|GO:0016841
Cca02g00447 715 SUPERFAMILY L-aspartase-like 24 715 IPR008948 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00447 Cca-Chr2 9383268 9387664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00447 17 715 Monolignol Biosynthesis Gene Families AT2G37040 83.977 0.0 1244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00447 K10775 - gmx:100803857 1341.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00447 02 9383268 9387664 Cca02g02017 02 40029222 40035096 ECH
Cca02g00447 02 9383268 9387664 Cca02g00447 02 9383268 9387664 ECH