Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00444 ATGAAGTCAAGATTTCTTAGAGGGTGCCTTAAGAAGTGCAAGAAAATGGGGGGTAGAGTCATATCTTGTGGTACTTGTGAGCACTGTTGTGAATGGGCTTTGTGGTCCTCTACTTTGCATGAAGGTTGCTCCATTCCAAGTGATGTTCCAAAGGGTCACTTGGTTGTGTACGTGGGAGAGAACCACAAGAGATATGTGATCAAGATCGCATTGCTCCATCACCCTCTCTTCAGGGCATTGCTAGATCAAGCTCAGGAAGAGTATGATTTCATTGCAGACTCAAAACTCTGCATTCCTTGTGATGAACACCTCTTCCTCAATGTCCTTCGATGTGCAAGCTCCCCACAGAACCAACGAGTGTGTCTGTGTCTTTGA 375 0.456 MKSRFLRGCLKKCKKMGGRVISCGTCEHCCEWALWSSTLHEGCSIPSDVPKGHLVVYVGENHKRYVIKIALLHHPLFRALLDQAQEEYDFIADSKLCIPCDEHLFLNVLRCASSPQNQRVCLCL 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00444 124 Pfam Auxin responsive protein 43 111 IPR003676 GO:0009733
Cca02g00444 124 PANTHER AUXIN-RESPONSIVE FAMILY PROTEIN 2 124 - -
Cca02g00444 124 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 2 124 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00444 Cca-Chr2 9333095 9333709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00444 35 119 Calmodulin-binding Proteins AT4G34750 46.739 4.71e-22 83.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00444 02 9333095 9333709 Cca02g00444 02 9333095 9333709 ECH
Cca03g02381 03 44877847 44878224 Cca02g00444 02 9333095 9333709 PCT