Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00443 ATGAAATGCCAAAGAGTTCAGGTGGATGAATCATATGTACCTGCACTTCAAGATGAAGTAATGGAAGTTGAGCATTTGCTTGCAGAACCTAGAAATGATCATGCTTCCTTGGATGGTTGTTTGGATTCTCATACAACTTTGAATGACAAGGATGATTTGGAACTGGAGGTCCTTGATGGATTGCTTGATGATGTTGAAATCGATGATCTTGAAGGAACTGATGGTTTCTCTGGTGCATGTGAAGAATATTTATTGGATTTTGAATTTGCTGGCAAATTTGAGGAGGTACTAGGCTCTGATCCTTTTGAAGGTTCACTCTTGCAAAACTCAAGTTCAGAAAGTCATTCTTCTGGATTAAGCGGAAGTAGCATTGTTGGTGGGGTATTAGAATCAACAAAAGTACCTATTGCACAATCTGAATGTAAAAATGATTCTCTAGATGAGACAGTAACCTATGAATCACATGGTACCTTCAGGAACAATCCAAGTCAACCATCAAAAGTAAATTGCAGGTACAACATTTCACTTGATATACAACATCTGCAAGGGTTGGATAATGATTGTCAAGTAGCTAGTGGGTTATTGACATGTAAGAAGGAAAAGGGTCTTGTTGAAAAATGCCAACCTGCTGCACTTAGAGAGAAGAGATTCCGAAAGCCTACTCAGAGGTATATTGAAGAATTTTCAGATTCAAGGTCAAAAGAAAAGGTACCAACTGCTGATACAAAAGCTAAACATTCAAGTGACTCATCATGTAATGTATTTCATATAAGAATTAAAGCATTGAAAGAGAGTCCAAGCGAGAAGTCTAGTAATGAAAATAGTGACTTGATACTTCCTGAGTTGCAAGTTAGCAAAGGGCGTTTGAAGAAAGAGGAACTTGAGTATGATGAGGAGTCTTTTCCCTCGGAATCTGAGGATGGATGTTCCACAACAAAAAGATCTAGAAGAAACGATCGAAGAAAACATCAGAAGATGTGGACTCTCCCTGAAGTGATGAAGTTGGTTGAAGGCATATCAGAATATGGAGTTGGTCGTTGGACTGATATAAAGAGGTTTTTGTTTTCTTCTTCGAGCTACCGAACTCCCATAGATCTCAGGGACAAGTGGCGAAACCTTTTGAGAGCCAGTTCTGCACAGAAAAACAAGACAGAGGCTGAGCAAAATGACGAGCTTGCCCTGCGTCCCTTACCATTTAATGTGGTACATCGTGTGCGAGAATTGGCTAAAATTCACCCATACCCTAGGCAACGTGGGTCCAAGAAATCGCGTGTTAGCCAAGCTGGCTCTTTTGTCATTGCCAAAGATTCTCCTAGCAAAAGAAGTGTACGTAGGAAGAAGTGTACTTAA 1350 0.3993 MKCQRVQVDESYVPALQDEVMEVEHLLAEPRNDHASLDGCLDSHTTLNDKDDLELEVLDGLLDDVEIDDLEGTDGFSGACEEYLLDFEFAGKFEEVLGSDPFEGSLLQNSSSESHSSGLSGSSIVGGVLESTKVPIAQSECKNDSLDETVTYESHGTFRNNPSQPSKVNCRYNISLDIQHLQGLDNDCQVASGLLTCKKEKGLVEKCQPAALREKRFRKPTQRYIEEFSDSRSKEKVPTADTKAKHSSDSSCNVFHIRIKALKESPSEKSSNENSDLILPELQVSKGRLKKEELEYDEESFPSESEDGCSTTKRSRRNDRRKHQKMWTLPEVMKLVEGISEYGVGRWTDIKRFLFSSSSYRTPIDLRDKWRNLLRASSAQKNKTEAEQNDELALRPLPFNVVHRVRELAKIHPYPRQRGSKKSRVSQAGSFVIAKDSPSKRSVRRKKCT 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00443 449 Gene3D - 312 425 - -
Cca02g00443 449 ProSiteProfiles Myb-like domain profile. 319 374 IPR001005 -
Cca02g00443 449 SMART sant 323 376 IPR001005 -
Cca02g00443 449 Pfam Myb-like DNA-binding domain 326 374 IPR001005 -
Cca02g00443 449 SUPERFAMILY Homeodomain-like 326 394 IPR009057 -
Cca02g00443 449 PANTHER TRF-LIKE 8 1 447 - -
Cca02g00443 449 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 1 447 - -
Cca02g00443 449 CDD SANT_TRF 325 375 - -
Cca02g00443 449 MobiDBLite consensus disorder prediction 224 248 - -
Cca02g00443 449 MobiDBLite consensus disorder prediction 413 449 - -
Cca02g00443 449 MobiDBLite consensus disorder prediction 224 243 - -
Cca02g00443 449 MobiDBLite consensus disorder prediction 293 322 - -
Cca02g00443 449 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 318 378 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00443 Cca-Chr2 9321862 9326518 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00443 325 374 Single Myb Histone (SMH) Gene Family AT1G15720 50.000 2.43e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00443 - - gmx:100810255 704.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00443 02 9321862 9326518 Cca02g00443 02 9321862 9326518 ECH