Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00441 ATGAGGAACTATGCTTCCTGGCTCCCTCTTCTTTTCTTGTTGATCCCTTTCTTGTCACCAATTCAATGTGCCGATAACACTTTCGCTCCTTCCTTTTATTCCGAAGAAATCTATAAGGAGCTTGAAAACCTTGCTTCCCTATTAAGCAAGGACATTAAATCAGGTTTAGGTTTCTGCATCAAGGATGTGAATAAAGATTGGGAGGAAGCATTTGATTTTAAAGGAAAGTTGGATTTTGTGGATTCTTGTGTTAAGAAAAAAGGAGATTTTAGAGATAGAATATGTACTGTGGCTGAAGTAAGGTACTACTTCCACGGTTTCTTGGAACAAGGGGGATCATCTGCTAATTACGTAAAACCTAACAAGAATTGCAATTTGACCTCGTGGGTTTCTGGTTGTGAACCTGGATGGAGTTGTAGTGCTGGCAAAAATGTTGACCTAAAAAAGGACATAAAGGACATTCCTTTTAGAACCGACAATTGTCAGCCTTGTTGTGAAGGGTTTTTCTGCCCTCAAGGATTGACTTGCATGATACCTTGCCCACTAGGTTCTTATTGTCCACTTGCAAAACTAAACAATGAGACTGGAATGTGTGACCCATATAGTTACCAGATACCTCAAGGAGAAACAAATCATACTTGTGGTAGTGCTGATATTTGGTCTGGTGTGGTGAACAATAGTGATATCTTTTGTTCTCCAGGATCATACTGCCCGACTACAACACGTAAAGTTTCTTGTGATAGTGGATATTATTGCAGGATGGGTTCTACTCACCAAAATCAATGCTCCAGGTTGAGTACTTGTAATCCAAACACATCAAGCCAAAATATGCATGCATATGGAGCCTTGCTTATTGTTGCCTTGAGTACTCTCCTGATCTTCATTTATAATTGTTCTGATCAAGTTTTAGTTACTCGGGAAAGGAGGAAGGCTAAATCTAGGGAAGCTGCTGCTAGACAAGTAAGAGAAACTGTACAAGCTCGAGAAAGATGGAAAGTAGCAAAAGATGTTGCTAAGAAAGGTAAGGTAGGATTGCATGAGCAATTATCTCGCACCTTTTCTCGCAAAAAATCAGTAGGCCAAACTAAACGTGGTATGGGTGATACATTTTTGCCACCAACGGCTACAAATTCTTCAAGCATGTATGAAGAATCATCTGCAACTTCAAAAGAGCAAAACAAGGGACCTTCCAACCTTACTAAAATGTTGGATTCCCTTGAGAATGACCCACATGGCAATGAAGGATTCAATCTACAAATTGGAGATAAAAATATTAAAAAGCAGATGCCAAAAGGCAAACAATTACATACACAGAGCCAAATTTTGAGGTATGCTTATGGTCAAATTGAGAAAGAGAAGGCTCAACAAGAGAAAAATAAGAACTTGACTTTCTCGGGAGTTATTTCAATGGCTACTGAAGGCGACGTTCGAACAAGGCCTGTGATTGAGGTAGCTTTTAAAGATTTAACTCTCACTTTGAAAGGGAAAAGAAAACATTTATTAAGATGTGTGACTGGTAAACTTATGCCTGGTCGAGTTTCTGCTGTGATGGGTCCCTCTGGAGCTGGCAAAACTACATTTCTTTCTGCCTTGGCGGGGAAAGCAAGAGGATGCACTATGACAGGCTCAATTCTAATCAATGGAAAATCAGAATCCATTCATTGTTATCAAAAAATTATTGGTTTTGTGCCACAAGATGATATTGTTCATGGGAACTTGACTGTTGAGGAAAATCTTCGTTTTAGTGCAAGATGCAGACTATCTGCGGATATGCCAAAACCAGACAAGGTTTTGATTGTTGAAAGAGTAATTGAGTCCTTAGGACTTCAAGCAGTGAGGGATTCCCTTGTTGGGACAGTAGAAAAGCGAGGTATATCTGGAGGACAACGAAAACGTGTAAATGTAGGGATGGAGATGGTTATGGAGCCTTCATTATTAATCTTAGATGAGCCTACAACTGGCCTAGACAGTGCATCTTCCACACTATTGCTTAAAGCACTTCGTCGGGAAGCACTTGAAGGGGTAAATATTTGCATGGTACTTCACCAACCAAGCTACACGTTGTTCAGAATGTTTGATGATATAGTCTTTCTAGCCAAAGGTGGCCTTACTGCATATCATGGTCCTGTTAAAAAAGTAGAAGAATACTTTGCTAGCATTGGAATCACTGTACCTGATCGTGTGAATCCTCCAGACCATTTCATTGACATTTTGGAAGGTTTAGTGAAACCAAGTGGAGGTGTGACCCATCAACAACTTCCTGTCAGGTGGATGTTACATAATAGTTACCCAGTACCACCAGATATGCTTCATTTTGCTGATCAAATTGCTGcctcttcctcctcctcctcttcctcAAATATACATGATGCAACAAAAGGcacagatgaagttgttgatcaatcctttgctggagagttttgggaggatatgaagagtaatgttcagatccaccgagatcATATAGAGGCAACCTTCTTAAAGACTAAGGATTTATCTAATCGAAGAACTCCGGGTGTAGCTCGACAATATAGATATTACGTTGGGCGGGTTTGTAAGCAGACGCTACGAGAAGGAAAATCACAAGCCGTTGACTATCTCCTTTTATTAGTTGCTGGTGCTATATTAGGAACTCTTACAAAAGTAAATGATGAAACATTTGGGTCCCTCGGATATACATATACTGTTATTGCTGTCTCTTTACTTTGCAAGATTGCAGCTCTCAGATCATTTTCTCTGGATAAATTACAATATTGGAGGGAGAGTGCATCTGGAATTAGCAATTTGGCTCATTTTTTATCCAAAGATACAATTGATCTTTTCAATACAATCATCAAACCTGTAGTTTATCTGTCCATGTTCTATTTTTTTAGCAATCCTAGGTCAAGTTTCGCAAGTAATTATGCGGTTTTGGTCTGCCTTGTGTACTGTGTGAGTGGCATGGCTTATGCAATAGCAATTTATTTTGAGCCTGCTCCAGCACAACTGTGGTCAGTGCTTCTCCCAGTTGTTATGACTCTCATTGCAAACCAGACACAAGATACTCTCTTTATGAAGATCCTTGTAAAGTTGTGTTATCCAAATTGGGCTTTGGAAGCCTTTATCATTGCAAATGCTGAAAGGTATACTGGAGTATGGCTGATAACTCGGTGTAGTTCACTAATGAAGAATGGCTATAATGTTAGTGATTGGCCTCTTTGTTTGGTTGTCCTCATTTTTTATGGTATAATTGCTCGAGTTGTGGCCTTCTTTTGTCTAGTGATTACTCGAAAGAAGTGA 3279 0.3815 MRNYASWLPLLFLLIPFLSPIQCADNTFAPSFYSEEIYKELENLASLLSKDIKSGLGFCIKDVNKDWEEAFDFKGKLDFVDSCVKKKGDFRDRICTVAEVRYYFHGFLEQGGSSANYVKPNKNCNLTSWVSGCEPGWSCSAGKNVDLKKDIKDIPFRTDNCQPCCEGFFCPQGLTCMIPCPLGSYCPLAKLNNETGMCDPYSYQIPQGETNHTCGSADIWSGVVNNSDIFCSPGSYCPTTTRKVSCDSGYYCRMGSTHQNQCSRLSTCNPNTSSQNMHAYGALLIVALSTLLIFIYNCSDQVLVTRERRKAKSREAAARQVRETVQARERWKVAKDVAKKGKVGLHEQLSRTFSRKKSVGQTKRGMGDTFLPPTATNSSSMYEESSATSKEQNKGPSNLTKMLDSLENDPHGNEGFNLQIGDKNIKKQMPKGKQLHTQSQILRYAYGQIEKEKAQQEKNKNLTFSGVISMATEGDVRTRPVIEVAFKDLTLTLKGKRKHLLRCVTGKLMPGRVSAVMGPSGAGKTTFLSALAGKARGCTMTGSILINGKSESIHCYQKIIGFVPQDDIVHGNLTVEENLRFSARCRLSADMPKPDKVLIVERVIESLGLQAVRDSLVGTVEKRGISGGQRKRVNVGMEMVMEPSLLILDEPTTGLDSASSTLLLKALRREALEGVNICMVLHQPSYTLFRMFDDIVFLAKGGLTAYHGPVKKVEEYFASIGITVPDRVNPPDHFIDILEGLVKPSGGVTHQQLPVRWMLHNSYPVPPDMLHFADQIAASSSSSSSSNIHDATKGTDEVVDQSFAGEFWEDMKSNVQIHRDHIEATFLKTKDLSNRRTPGVARQYRYYVGRVCKQTLREGKSQAVDYLLLLVAGAILGTLTKVNDETFGSLGYTYTVIAVSLLCKIAALRSFSLDKLQYWRESASGISNLAHFLSKDTIDLFNTIIKPVVYLSMFYFFSNPRSSFASNYAVLVCLVYCVSGMAYAIAIYFEPAPAQLWSVLLPVVMTLIANQTQDTLFMKILVKLCYPNWALEAFIIANAERYTGVWLITRCSSLMKNGYNVSDWPLCLVVLIFYGIIARVVAFFCLVITRKK 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00441 1092 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 27 1088 - -
Cca02g00441 1092 CDD ABCG_EPDR 482 708 - -
Cca02g00441 1092 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 484 707 IPR027417 -
Cca02g00441 1092 ProSitePatterns ABC transporters family signature. 625 639 IPR017871 GO:0005524
Cca02g00441 1092 MobiDBLite consensus disorder prediction 349 413 - -
Cca02g00441 1092 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 484 725 IPR003439 GO:0005524
Cca02g00441 1092 Gene3D - 475 722 IPR027417 -
Cca02g00441 1092 PANTHER WHITE-BROWN COMPLEX HOMOLOG PROTEIN 30-RELATED 27 1088 - -
Cca02g00441 1092 Pfam ABC transporter 504 652 IPR003439 GO:0005524
Cca02g00441 1092 MobiDBLite consensus disorder prediction 371 404 - -
Cca02g00441 1092 Pfam ABC-2 type transporter 682 1092 IPR043926 GO:0140359
Cca02g00441 1092 SMART AAA_5 510 702 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00441 Cca-Chr2 9284930 9295513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00441 511 704 Calmodulin-binding Proteins AT2G36910 28.218 3.64e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00441 - - gmx:100812387 2004.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00441 02 9284930 9295513 Cca02g02009 02 39954501 39962196 ECH
Cca02g00441 02 9284930 9295513 Cca02g00441 02 9284930 9295513 ECH