Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00440 ATGAAGTGTTTTGCATTTTACTTTGGGGAGAGGAAGGCTGGTCCCAAGGGCTTGCAGTCATTGTCGGGTCGGTCCAACAGTTCTACATATGTTGAGGCTGAGATGAGAAGATCTGGTTCTGAATTGAACTCTATGGATGCCTCGGACAACAGCACAGATTCCCAAAGGAGAAGTGCATTTCCCAGTTTGTCCCAAAGACCCAGCAACCTCAGAGTATTTACAGTATCTGAGCTAAAAACTGCCACAAAGAATTTTAGTCGCTCTGTCATGCTTGGAGAGGGTGGTTTTGGGTGTGTATACAAGGGGTTGCTCAAGAGTGTAGATGATCCTTCCACAAAAATTGAAGTTGCGGTTAAACAGCTTGGTAGAAGAGGAATTCAGGGGCATAAAGAATGGGTAACAGAAGTGAATGTTCTGGGTATTGTGGAGCATCCCAATCTGGTGAAACTAGTGGGATACTGTGCTGATGATGATGAAAGAGGAATCCAGCGGCTTCTGATTTATGAATATATGCCAAATAGAAGTGTGGAACACCATTTATCACCACGATCAGAAACTCCTCTCCCATGGATTAGAAGATTGAAAATAGCTCAAGATGCGGCTCGTGGCTTAACATACCTGCATGAGGGAATGGATTTTCAGATAATTTTCAGAGATTTCAAAGCTTCAAATATCCTTTTGGACGAGCAGTGGAATGCAAAACTGTCAGACTTTGGGCTAGCAAGATTGGGACCATCTGATGGGTTAACTCATGTCTCAACGGCGGTTGTAGGTACAATGGGTTATGCAGCTCCTGAATATGTTCAAACTGGACGTCTCACATCAAAGAGTGATGTATGGAGCTATGGTGTCTTCCTCTATGAACTCATTACTGGAAGGCGCCCTATCGATCGAAATCGCCCCAAGGGTGAGCAGAAGCTGTTGGAATGGGTAAGGCCATACCTTTCAGATGGGAGGAAATTTCAAATAATATTGGATCCAAGACTTGAGAGAAAACACCTCTTCAAGTCAGCACAAAAACTTGCTATAATAGCCAACAGATGTTTGGTCAGAAACCCAAAGAATCGCCCAAAGATGAGTGAAGTGTTGGAAATGGTGACTCGGATTGTGGAGTCTTCAGCGAGTACTAATCCACAGCCACCCTTGAAGAGTGTAGTAGCCTCAGCAGAAGATTCTCAGGGCACTGAAATAAAGAACAAGAAAATTACCATGGATGAAAAAACAGATTGTAATTGGTTAAGGATGTGGAGGCCAAAGCTTTTGAGAGCATGTAGATTGTAG 1281 0.4356 MKCFAFYFGERKAGPKGLQSLSGRSNSSTYVEAEMRRSGSELNSMDASDNSTDSQRRSAFPSLSQRPSNLRVFTVSELKTATKNFSRSVMLGEGGFGCVYKGLLKSVDDPSTKIEVAVKQLGRRGIQGHKEWVTEVNVLGIVEHPNLVKLVGYCADDDERGIQRLLIYEYMPNRSVEHHLSPRSETPLPWIRRLKIAQDAARGLTYLHEGMDFQIIFRDFKASNILLDEQWNAKLSDFGLARLGPSDGLTHVSTAVVGTMGYAAPEYVQTGRLTSKSDVWSYGVFLYELITGRRPIDRNRPKGEQKLLEWVRPYLSDGRKFQIILDPRLERKHLFKSAQKLAIIANRCLVRNPKNRPKMSEVLEMVTRIVESSASTNPQPPLKSVVASAEDSQGTEIKNKKITMDEKTDCNWLRMWRPKLLRACRL 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00440 426 MobiDBLite consensus disorder prediction 34 64 - -
Cca02g00440 426 Gene3D Phosphorylase Kinase; domain 1 58 170 - -
Cca02g00440 426 Gene3D Transferase(Phosphotransferase) domain 1 171 388 - -
Cca02g00440 426 MobiDBLite consensus disorder prediction 373 394 - -
Cca02g00440 426 MobiDBLite consensus disorder prediction 41 64 - -
Cca02g00440 426 ProSiteProfiles Protein kinase domain profile. 85 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00440 426 PANTHER KINASE 1B 12 411 - -
Cca02g00440 426 CDD STKc_IRAK 91 369 - -
Cca02g00440 426 ProSitePatterns Protein kinases ATP-binding region signature. 91 119 IPR017441 GO:0005524
Cca02g00440 426 Pfam Protein tyrosine and serine/threonine kinase 90 364 IPR001245 GO:0004672|GO:0006468
Cca02g00440 426 PANTHER OS01G0588500 PROTEIN-RELATED 12 411 - -
Cca02g00440 426 SUPERFAMILY Protein kinase-like (PK-like) 60 366 IPR011009 -
Cca02g00440 426 MobiDBLite consensus disorder prediction 373 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00440 Cca-Chr2 9271821 9276395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00440 1 403 Glycoside Hydrolase AT3G07070 42.005 8.04e-98 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Cca02g00440 PK_Tyr_Ser-Thr 5.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00440 - - gmx:100305438 780.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02384 03 44891970 44898149 Cca02g00440 02 9271821 9276395 PCT