Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00438 ATGACCTCATCACAACTTGTCGTACACAACATTTCTCACTCCGACACTAAACCCTCCGCCGCCGTCGCCAAGAGACCTTCCTCCGCCGCCGCCCGCTCCTCCAAGGACCGCCACACCAAGGTCAACGGCCGCGGCCGCCGCGTCCGCATGCCGCCGCTCTGCGCCGCCCGCATATTCCAGCTCACGCGCGAGCTCGGCCACCGTTCCGACGGCGAGACCATTGAGTGGCTCCTCCGCCACGCCGAGCCCTCCATCATTgccgccaccggcaccggcaccgtccccgccgcccctgtctcctccgtcgccgcctccgctccctccgccgagccctccgtcgcgtgccccctcaccgctgtcgccgcccatgggatgttcgccgtgcctccgccgcagccgagctgccgcctcgacctgtgcccgccgccgGTGATGGAGTTCGCGGCGGCGAACGGGTACCGGCACATGCCGTTCACGGCGCTGCTCTTGCAGCCCACGGCGGCGGAGGATAATCAAAACGACGAGTCTCTCAGCGAACAATGA 543 0.4438 MTSSQLVVHNISHSDTKPSAAVAKRPSSAAARSSKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAATGTGTVPAAPVSSVAASAPSAEPSVACPLTAVAAHGMFAVPPPQPSCRLDLCPPPVMEFAAANGYRHMPFTALLLQPTAAEDNQNDESLSEQ 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00438 180 ProSiteProfiles TCP domain profile. 34 88 IPR017887 -
Cca02g00438 180 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 21 110 IPR005333 GO:0003700
Cca02g00438 180 MobiDBLite consensus disorder prediction 1 17 - -
Cca02g00438 180 MobiDBLite consensus disorder prediction 1 44 - -
Cca02g00438 180 Pfam TCP family transcription factor 33 109 IPR017887 -
Cca02g00438 180 PANTHER TRANSCRIPTION FACTOR TCP16-RELATED 21 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00438 Cca-Chr2 9226109 9227082 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00438 34 165 TCP Transcription Factor Family AT2G37000 59.091 1.28e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Cca02g00438 TCP 2.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00438 - - aprc:113870815 243.047