Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00426 ATGTTTAGGTATTTTGTTGAGAGGATGCAAAAGGGTCTTTCACTGTTTGGACCAAGGAGGCCTGCATTTAGCTACTTCAGTGAAGATTGTGCAACAACTGATGATGTTATGGAAGGATACTTTGTTGTTCTTGCAATCAAGGGTCAAGAAACCAAAAGGTTTATTGTTAGTTTGGAGTACTTGACTGATCCTGCATTCTTGGAACTTCTGGATGAAGCTCGGGAAGAGTATGGTTTCACACAGCAAGGAGCACTTGCACTACCTTGTCGACCTCAAGAGTTACAGAAGATTCTAGATGCTCCAAAAGCTAAGAGTGGGGAATATCAAAGACGATGCAAGGAATACTGGTCCATATCCGCGTGTAGATCCAACTACTAG 378 0.4233 MFRYFVERMQKGLSLFGPRRPAFSYFSEDCATTDDVMEGYFVVLAIKGQETKRFIVSLEYLTDPAFLELLDEAREEYGFTQQGALALPCRPQELQKILDAPKAKSGEYQRRCKEYWSISACRSNY 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00426 125 Pfam Auxin responsive protein 31 99 IPR003676 GO:0009733
Cca02g00426 125 PANTHER SAUR-LIKE AUXIN-RESPONSIVE FAMILY PROTEIN 2 102 - -
Cca02g00426 125 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 2 102 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00426 Cca-Chr2 8932823 8933331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00426 27 89 Calmodulin-binding Proteins AT4G34750 39.683 5.21e-10 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00426 - K14488 gmx:100818734 152.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02389 03 44952504 44953665 Cca02g00426 02 8932823 8933331 PCT