Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00425 ATGAGTGCATCTCAACCCAGAAGCCACATAATGAATCACTTGACCATTGAAACTGAAGATTCTTTTGCAAGCTTGCTTGAGCTTGCAGCTAATAACGATGTTGAAGGTTTTAGGCGAATGATTGAGAGGGATCCTTCCTGTGTTGACGAAGTAGGATTATGGTACAGTCGTCGCAAGGGATCTAGGCTGATGGTCAATGAACTTAGAACCCCATTGATGATTGCTGCTACTTATGGTAGCATTGATGTTATGGATCTGATTCTTTCACTTTCTGGTTATGATATTAATAAGCCTTGTGGCCTTGACAAGAGCACAGCCCTTCATTGTGCGGCATCAGGTGGGGCTGAAAATGCTTTTGAGGTTGTTATGTTGCTTCTAGCCGCTGGGGCCGATCCAAACTGTGTGGATGGAAATGGTCATCGTCCGGTCGATGTGATTGTTGTTCCTCCCAAACATAAATCCGTTAGAAACAATCTTGAAGCACTTCTCCAAACTGATGACTCCATTGCAGTGTGTAATCTTAGGGTGATCACGACCCCATCAAATGCATCATATTCTCCACCTTTATCAACTTCACCAGATGATGGGTCTCCTTCTGCAGCAGATTTCCAATTGAAGTCAAAGTTGAATGATGACTTTGTTTCTTCTGCATCAGAGAAGAAAGAATACCCTGTTGATCCATCCCTTCCTGACATCAAGAATAGCATATATTCAACTGATGAATTCCGAATGTATTCTTTCAAAGTCAGACCTTGTTCGCGTGCTTACTCACATGATTGGACTGAATGCCCTTTTGTTCATCCAGGGGAGAATGCTCGAAGAAGGGACCCGCGAAAGTACCATTACAGCTGTGTCCCTTGTCCTGATTTTCGGAAGGGTGCTTGCCGACGTGGAGATATGTGTGAATATGCTCATGGTGTTTTCGAGTGCTGGCTACATCCAGCACAATATCGAACCCGGCTTTGCAAGGACGGGATAAGTTGCTCCAGAAGAGTTTGCTTTTTTGCTCACACTGCCGAGGAGCTTCGACCATTGTATATTTCAACAGGTTCTGCTGTACCATCTCCTCGCTCAAGCTCGTCATCTGCTATGGATTTTGCTGCTGCCATGAACATGTTGCCTGGCACTCCTTCCTCGATGTCTGTCATGTCTCCTTCACCATTCACTCCGCCTATGTCACCCTCTGGAAATGGCATGTCACACTCATCTGTTGCCTGGCCCCACCCACACGTACCAGCCTTACATCTGCCAGGGAGTAATCTTCATTCCAGTCGGTTGAGATCTTCATTCAATGCTAGAGATATTCCTATGGATGACTTTGACTTGTCTGATTATGATGTTcagcagcagcagcagcaacagcTTCTTAACGAGTTATCTTGTCTCTCTAAACAGCCTAATGCTATGAACCGCTCAGGTCGCATTAAAACATTGAACCCGTCAAATCTTGATGAGCTATTTTCTTCTGAGAGTTCATCCCCTCGGTTTGCTGATCCAGCATTGGCTTCAGCTGTTTTTTCTCCAACACATAAATCAGCTGTCTTTAATCAATTTCAGCATCAGCAAAGCTTGTTGTCACCTGTGAACACAAAATTTTCTCCTAAAAATGTTGAGAATCCATTACTGCAGACCCCTTTTGGCATTCAAACTTCAGGAAGGATGTCTCCACGTAACATGGAACCTATTTCTCCAATGAGCTCTCGGATTTCTGCACTAGCTCAACGTGAAAAGCAGCAACAGTTCCGAAGCCTCAGCTCCAGAGAACTTGGCTCCAACTCTGCTACTGTTGCTGTTGCTGGTGAGTCCCAAGTGAGTTCTTTGTCAAAGTGGGGATCTTCCAATGGTGCATTGGATTGGACTGTCAATGGAGACGAATCAGGGAAACTTCGAAGATCATCCTCATTTGAGACCGGGAATAATGGCGAGGAGCCAGATTTTTCATGGGTGCAGTCACTTGTTAAAGAGTCTCCGTCAGAGATCAAGGAGAATTCAGCAAAGACAGTAACAAGCGTTGCAGCAGCTGGATCCTCCAGTGAGGTATCGAATATGAGCATGCAAACAGACACCATTGATCATGCCATGTTAGGAGCATGGCTTGAACAAATGCAGCTTGATCATCTTGTGGTTCAGCAAAATTAA 2139 0.4427 MSASQPRSHIMNHLTIETEDSFASLLELAANNDVEGFRRMIERDPSCVDEVGLWYSRRKGSRLMVNELRTPLMIAATYGSIDVMDLILSLSGYDINKPCGLDKSTALHCAASGGAENAFEVVMLLLAAGADPNCVDGNGHRPVDVIVVPPKHKSVRNNLEALLQTDDSIAVCNLRVITTPSNASYSPPLSTSPDDGSPSAADFQLKSKLNDDFVSSASEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGISCSRRVCFFAHTAEELRPLYISTGSAVPSPRSSSSSAMDFAAAMNMLPGTPSSMSVMSPSPFTPPMSPSGNGMSHSSVAWPHPHVPALHLPGSNLHSSRLRSSFNARDIPMDDFDLSDYDVQQQQQQQLLNELSCLSKQPNAMNRSGRIKTLNPSNLDELFSSESSSPRFADPALASAVFSPTHKSAVFNQFQHQQSLLSPVNTKFSPKNVENPLLQTPFGIQTSGRMSPRNMEPISPMSSRISALAQREKQQQFRSLSSRELGSNSATVAVAGESQVSSLSKWGSSNGALDWTVNGDESGKLRRSSSFETGNNGEEPDFSWVQSLVKESPSEIKENSAKTVTSVAAAGSSSEVSNMSMQTDTIDHAMLGAWLEQMQLDHLVVQQN 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00425 712 MobiDBLite consensus disorder prediction 183 198 - -
Cca02g00425 712 MobiDBLite consensus disorder prediction 615 646 - -
Cca02g00425 712 ProSiteProfiles Ankyrin repeat profile. 102 137 IPR002110 GO:0005515
Cca02g00425 712 ProSiteProfiles Zinc finger C3H1-type profile. 286 308 IPR000571 GO:0046872
Cca02g00425 712 ProSiteProfiles Ankyrin repeat region circular profile. 102 136 - -
Cca02g00425 712 MobiDBLite consensus disorder prediction 183 202 - -
Cca02g00425 712 Pfam Ankyrin repeats (3 copies) 67 136 IPR002110 GO:0005515
Cca02g00425 712 MobiDBLite consensus disorder prediction 537 563 - -
Cca02g00425 712 Coils Coil 445 465 - -
Cca02g00425 712 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 286 306 IPR000571 GO:0046872
Cca02g00425 712 SMART ANK_2a 67 97 IPR002110 GO:0005515
Cca02g00425 712 SMART ANK_2a 102 134 IPR002110 GO:0005515
Cca02g00425 712 Gene3D - 4 156 IPR036770 -
Cca02g00425 712 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 11 709 - -
Cca02g00425 712 SUPERFAMILY Ankyrin repeat 26 147 IPR036770 -
Cca02g00425 712 PANTHER UNKEMPT FAMILY MEMBER 11 709 IPR045234 -
Cca02g00425 712 Gene3D - 282 344 - -
Cca02g00425 712 SMART c3hfinal6 316 339 IPR000571 GO:0046872
Cca02g00425 712 SMART c3hfinal6 281 307 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00425 Cca-Chr2 8894596 8899052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00425 17 705 C2H2 Transcription Factor Family AT5G12850 53.738 0.0 682
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca02g00425 Ank_2 9e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00425 - - gmx:100813554 1162.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00425 02 8894596 8899052 Cca02g00425 02 8894596 8899052 ECH