Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00424 ATGCTTGGACAAGGGAATTTCCTCCTTAGATTACCATTCTTGCTATATATCTTCATTTGCTTCTTGATACGTTCTGTTGTGGGAGCTGAGATTCCATTAGGTTCCAAATTTTCTGTGGCTGACAATGATTGTTGGGTTTCCTCCAATGGTGATTTTGCAATTGGATTCTTCAACATTTCAGATCAACCTAACCAGTTTAGTGTTGGCATTCGGTTTAATTCGGAGTCTATTCTGGTTAGCCAACAAACTGTGGTTTGGGTTGTTGGTGGCCAGGACACAGTAGGCTACATGTCTTACTTTGAACTCACACAGGAAGGGGAACTGGTCCTGTTTGATTCCTCACAAGAAGTTTCTGTTTGGACTAGCAACACAGGAAACCGATCTGTAGCTTCAGCTATGCTCCTTGACAATGGAAATCTTGTCCTAATGGACAAAGAGCAACACATCATTTGGCAAAGTTTTGATACTCCATCTGATACACTTCTCCCAGGACAAAGCTTGTTTGCCACCAATATGCTTCGTGCTGCGAGCAAGAATCACAAGTCCAGTTACTATACTCTTCACATGAATGCTTCAGGTCATTTGGAGCTACATTGGGAAAGTGATGTTATCTACTGGACAAGTGGAAATCCTTCTGCTTTGAATCTCAGTGCATTCCTTACAACCAGTGGAGCTCTGGAGCTTCGAGACCAGAGATTGAAACCTGTTTGGTCTGTGTTTGGAGAGGATCATAATGATTCTGTGAAATACAGATATCTCCGGCTCGATGTGGATGGCAATCTTCGCTTATACTCATGGGTTGAAGGTTTAGGATTGTGGAGATCGGTGTGGCAAGCTGTTGAGAATCAGTGCAAGGTCTTTGCAACTTGTGGTCAACTTGGTGTGTGTGTCTTCAATGCCTCAGGTTTTGCTGAATGCCAATGCCCATTTGAGGTAATTGGGACTAAATGTTTGGTTCCAGATGAAAGGGAGTGTGAATCTGGCTCCAATATGATAGCATATAAGAACACATATCTTTATGCATTCTACCCTCCTGTTAATGCTGTTATCACAAGTAGTTTGCAGCATTGTCAACAGCTGTGCCTGAATGACACGCAATGTCGGGCTGCAACCTTTTCCAATGATGGAATTCCACAATGCTATATAAAGAAAACTGGGTATGTAACTGGTTATTCAGATCCTTCTGTAAGCTCAATATCATTTGTTAAGAAATGTTCAGGTCCGTTTGCTGTAAATCCAAGTCTCACCATGTCTTCTCCTTCCAAACCATCTTCTAGGCTGTGTGTTCCTTGTCTAATAGGAGCTGCCACAGGCACATTTTTCATCTTTGTTATTCTCCAATTGGGAATTGGGATCTTCATAATCTACAGAAGAAAAAACTCTACCAGGAAAAAGGCCACTTTAGCTTTCATAGGCACAAACTCAAAGGGCTTAATAGTGTTGTCCTTCTCAGAAATCAAGAGCGTCACAGGGGATTTCAAGAATCAAATTGGGCCAAAGGTGTTCAAGGGTTTGCTACCAAACAATCACCTGATTGTGGTTAAAGACCTGAATGCGTCCATAGAGGAAAGGAAGTTCCGAAGTGCTGTTATGAAGATGGGTAGCATCCATCACAAGAGCCTTGTGAAACTAGAGGGTTATTGTTGTGAGTTTGATCATAGGTTTCTAGTGTATGAATACTGCAAGAAAGGTTCAGTGGACAAGTACATAGATGATTCTACTCTTTGCAGGATGCTAACATGGAGAAAGAGAGTTGAGATATGCTCAAGTGTGGCAAAGGCCATATGTTATTTGCACTCAGGGTGCAAGGAGTTCATAAGCCATGGAAACTTGAAATGTGAAAATGTCATGTTGGATGAAAACTTAGGTGCCAAGGTGACTGAATTTGGGTTTGCTATTGCAGATGGTAAGGCAGCATTTTGTGGCTTTTCAGCTGAGAAGGATGTGGAGGATTTTGGCAAGTTGGTTTTGACCTTGTTAACCGGGATTCGCGATCATGAACACGTTGAACTTTGCGAGTGGGCATATAAAGAATGGATGGAAGAGAGAGTGGCCAATGTGGTTGATAAGAGAATAGAAGGAGATTGTGATTCAGAAGAGCTCGAGCGCGCATTGAGAATTGCATTTTGGTGCCTTCAAATGGATGAACGTAGGAGACCTTCCATGGGGGAGGTAGTAAGAGTGCTTGATGGAACATTGAGTGTTGATCCCCCACCACCTCCATTTGCCTTTCAGAGACCCTTACAGGTAGATGATTCAGAAGTAAATGGCTCAGAGTTAGAAGTATTCAATTTTTAG 2298 0.423 MLGQGNFLLRLPFLLYIFICFLIRSVVGAEIPLGSKFSVADNDCWVSSNGDFAIGFFNISDQPNQFSVGIRFNSESILVSQQTVVWVVGGQDTVGYMSYFELTQEGELVLFDSSQEVSVWTSNTGNRSVASAMLLDNGNLVLMDKEQHIIWQSFDTPSDTLLPGQSLFATNMLRAASKNHKSSYYTLHMNASGHLELHWESDVIYWTSGNPSALNLSAFLTTSGALELRDQRLKPVWSVFGEDHNDSVKYRYLRLDVDGNLRLYSWVEGLGLWRSVWQAVENQCKVFATCGQLGVCVFNASGFAECQCPFEVIGTKCLVPDERECESGSNMIAYKNTYLYAFYPPVNAVITSSLQHCQQLCLNDTQCRAATFSNDGIPQCYIKKTGYVTGYSDPSVSSISFVKKCSGPFAVNPSLTMSSPSKPSSRLCVPCLIGAATGTFFIFVILQLGIGIFIIYRRKNSTRKKATLAFIGTNSKGLIVLSFSEIKSVTGDFKNQIGPKVFKGLLPNNHLIVVKDLNASIEERKFRSAVMKMGSIHHKSLVKLEGYCCEFDHRFLVYEYCKKGSVDKYIDDSTLCRMLTWRKRVEICSSVAKAICYLHSGCKEFISHGNLKCENVMLDENLGAKVTEFGFAIADGKAAFCGFSAEKDVEDFGKLVLTLLTGIRDHEHVELCEWAYKEWMEERVANVVDKRIEGDCDSEELERALRIAFWCLQMDERRRPSMGEVVRVLDGTLSVDPPPPPFAFQRPLQVDDSEVNGSELEVFNF 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00424 765 Pfam S-locus glycoprotein domain 245 308 IPR000858 GO:0048544
Cca02g00424 765 ProSitePatterns EGF-like domain signature 1. 306 317 IPR000742 -
Cca02g00424 765 SUPERFAMILY alpha-D-mannose-specific plant lectins 81 209 IPR036426 -
Cca02g00424 765 Pfam PAN domain 336 394 IPR003609 -
Cca02g00424 765 Gene3D Hepatocyte Growth Factor 324 407 - -
Cca02g00424 765 PIRSF SRK 6 762 IPR024171 GO:0004674
Cca02g00424 765 ProSiteProfiles Bulb-type lectin domain profile. 30 155 IPR001480 -
Cca02g00424 765 SUPERFAMILY Protein kinase-like (PK-like) 479 729 IPR011009 -
Cca02g00424 765 Pfam D-mannose binding lectin 83 169 IPR001480 -
Cca02g00424 765 Gene3D - 157 270 IPR036426 -
Cca02g00424 765 PANTHER OS07G0415500 PROTEIN 7 759 - -
Cca02g00424 765 ProSiteProfiles EGF-like domain profile. 280 318 IPR000742 -
Cca02g00424 765 CDD B_lectin 46 157 IPR001480 -
Cca02g00424 765 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD3-1 7 759 - -
Cca02g00424 765 Gene3D Phosphorylase Kinase; domain 1 454 560 - -
Cca02g00424 765 ProSiteProfiles Bulb-type lectin domain profile. 158 276 IPR001480 -
Cca02g00424 765 Gene3D Transferase(Phosphotransferase) domain 1 638 735 - -
Cca02g00424 765 Gene3D Transferase(Phosphotransferase) domain 1 561 637 - -
Cca02g00424 765 SMART ntp_6 326 404 IPR003609 -
Cca02g00424 765 SUPERFAMILY alpha-D-mannose-specific plant lectins 171 275 IPR036426 -
Cca02g00424 765 ProSiteProfiles Protein kinase domain profile. 465 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00424 765 Gene3D - 29 156 IPR036426 -
Cca02g00424 765 SMART blect_4 36 157 IPR001480 -
Cca02g00424 765 ProSiteProfiles PAN/Apple domain profile. 325 405 IPR003609 -
Cca02g00424 765 Pfam Protein tyrosine and serine/threonine kinase 508 635 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00424 Cca-Chr2 8849891 8852988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00424 395 757 Receptor kinase-like Gene Family AT4G23220 28.180 3.38e-38 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Cca02g00424 PK_Tyr_Ser-Thr 6.4e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00424 - - gmx:100812107 1299.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00424 02 8849891 8852988 Cca02g00424 02 8849891 8852988 ECH