Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00418 ATGGATGAGTCCAACACTGGTGTTTGTACCCATTTAACATTGGGTATGTGTCCTTGTTCTGCAACCACGACGCATGTTTTTGGTTCTTCTTCTTCCACCAAGAAGAGGAAGCTTTGCAAAAGAGCCCATGTTTCTAAAAGAAAGAAAACAACAACATGCAatgatgatgatgatgagatatgGAAAATTAAAAAGGTGCTGAAAGAAAGTGATGTTGGTAACATGAGCAGATTGATGATGGGAAGAGATATGGCAGAAGACTTTGTTCTGCCAATGTTGGATGTTGATGCTGAAGAAATTAACAAAGGAATTGCTGTCAGTATTTGGGATGTGGACACACGCTCCATGCACTCTCTTGTTTTCAAGAGATGGGTTTCCTCAAGAAGCTATGTTTTCATTGGCAATTGGGGCAAAGATTTTGTTGCAAGAAGAGGCTTAAAGAAAGGAGATGAAATTGGCCTTCGCTGGAATCCATTCATCAATGCATTCAATTTCTCGGTTCTTCATGTCAATTATTTAGGATAG 525 0.381 MDESNTGVCTHLTLGMCPCSATTTHVFGSSSSTKKRKLCKRAHVSKRKKTTTCNDDDDEIWKIKKVLKESDVGNMSRLMMGRDMAEDFVLPMLDVDAEEINKGIAVSIWDVDTRSMHSLVFKRWVSSRSYVFIGNWGKDFVARRGLKKGDEIGLRWNPFINAFNFSVLHVNYLG 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00418 174 Gene3D - 52 166 IPR015300 -
Cca02g00418 174 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 31 169 - -
Cca02g00418 174 CDD B3_DNA 61 168 IPR003340 GO:0003677
Cca02g00418 174 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 31 169 - -
Cca02g00418 174 SUPERFAMILY DNA-binding pseudobarrel domain 58 158 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00418 Cca-Chr2 8741794 8742318 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00418 63 152 B3 DNA Binding Superfamily AT3G24650 33.333 1.80e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00418 - - gmx:102663812 239.965