Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00415 ATGGGAAATTGCTGCGCGAGGCCGGGGGGCCCGCaggagaagaagaagcggaaggagaagaaggcgaaggaggagggggcggggaggaAGCTGGTGGTGCTGAGGGAGGCGACGGGGCGGGACATAGGGGTGCGGTACGAGGTGGGGCGGGAGCTGGGGCGGGGGGAGTTCGGGGTGACGTACCTGTGCCGCGACAGGGAGAGCGACGAGGAGTTGGCGTGCAAGAGCATATCGAAGAAGAAGCTGCGAACGGCGATCGACATAGAGGACGTCAGGAGGGAGGTTGAGATCATGAGGCGTTTGCCCAAACACCCAAACGTCGTGTCCTTGAAGGAGGCCTACGAGGACCACGACGCCGTTCACCTCGTCATGGAGCTCTGCGAGGGCGGCGAGCTCTTCGACCGCATCGTCGCGCGCGGCCACTACACCGAGCGCGCCGCCGCCGCTGTTACCAAAACCATCGTCCAAGTCGTCCAGATGTGCCACAAACATGGAGTGATGCATCGCGATCTCAAACCTGAGAACTTTTTGTTTGCAAACAAGAAGGAAACAGCACCCCTTAAAGCGATTGACTTTGGATTGTCAGTTTTCTTTAAACCAGGTGAAAGGTTTAATGAGATAGTTGGAAGTCCATATTACATGGCTCCCGAGGTATTAAAGCGTAATTATGGCCCAGAAGTAGATATCTGGAGTGCTGGAGTAATTCTCTACATCTTACTTTGTGGTGTCCCGCCGTTTTGGGCAGAAACTGAACAGGGAGTTGCTCAAGCAATTATTCGATCTGTTCTTGATTTTAGAAGGGAGCCATGGCCAAAGGTTTCTGATAATGCCAAAGACCTTGTGAAGAAAATGCTTGATCCTGACCCCAAGCGCCGGCTTACTGCCCAAGAAGTGTTAGATCATCCATGGTTACAGAATGCAAACAAAGCTCCTAATGTTTCGTTGGGAGAGACTGTTAGAACAAGGCTCATGCAATTTTCTGTAATGAACAAGCTTAAGAAAAGAGCTCTGAGAGCGATTGCAGAGCATTTGTCTATAGAAGAAGTTGCTGGGATAAAAGAAGGATTCGAGGTGATGGATACTGAAAATAATGGCAAGATTAACATTGATGAGCTTCGAGTAGGGTTGCATAAACTAGGTCACCAAATTCCTGATGAAGATGTCAAAATACTTATGGAAGCTGGTGATGTAGACAAAGATGGGTACCTAGATTATGGGGAGTTTGTTGCCATTTCTATTCATCTGAGGAAGATAGGCAATGACGAGCACCTTCACAAAGCCTTCCAATTCTTTGATCAGAACCAAAGTGGATATATTGAAATTGAGGAGTTACAAAAAGCCTTAGCGGATGAGATTGAAGCAAACAGTGAAGAAGTCATCAATGCAATTATGCATGATGTGGACACAGATAAGGATGGAAGAATAAGCTATGAAGAATTTGCTGCAATGATGAAGGCTGGCACAGATTGGAGGAAAGCATCAAGGCAGTATTCAAGAGAGAGcttTCCACTTCCAAGGTTGTCGTTCCTTAGTGAAGGTTCCAACTTCAACATGACGGTGACACCTAAGATCTCGGTTAGTGATGATGGAAACCTGGTGGTTCACGGCAAGACCATACTGAGTGGTGTGCCAAAGAACATTTTGCTGTCTCCAGGAACTGGAGATGGCCTTATGACAGGTGCATTTATTGGTGCTACTTCTTCCAACAGCAAAAGCCTCCATGTCTTTCCCATGGGTGTCTTAGAGGATCTTCGGTTCTTGTGTTGTTTCCGGTTCAAGTTGTGGTGGATGACTCATAGAGTTGGAACTTGTGGGAGGGATGTGCCATTGGAGACTCAATTCATGCTTATAGAGTGCAAAGACAGTAAAGATCACCAGCATAATTCTCCAACAGTCTACACTGTCCTGCTTCCTCTCTTGGAAGGCCAGTTCCGGGCTGTTCTACAAGGCAATGACAAAAATGAAATAGAAATTTGCCTTGAGAGTGGAGATCCTGCTGTTGAGACCAATCATGGTCTTCACTTGGTCTACATGCATGCTGGAACCAACCCCTTTGAAGTCATCAACCAAGCTGTCAAGGCTGTAGAAAAGTATATGCAAACGTTCCTTCACCGTGAGAAGAAAAGATTGCCATCTTTTCTTGACTGGTTTGGCTGGTGCACATGGGATGCTTTCTATACTGATGTTACAGCAGAGGGTGTTGAAGAAGGCCTCAAAAGCTTATCAGAGGGAGGTACATCTCCACGGTTCCTCATCATAGATGATGGTTGGCAACAGATTGAAAGTAAACCAAAGGACGCTGATTCTGTTGTACAAGAAGGAGCACAGTTTGCTACTAGGCTGACTGGTATTAAAGAAAATACTAAATTTCAAAAGAATGCAGAGAGCAACGACACAATCTCCGGTCTGAAGCATGTTGTACAAGAAGCAAAGCAACGCCACGGTGTGAGACATGTTTATGTTTGGCATGCTCTAGCTGGTTATTGGGGTGGAGTGAAGCCTGCAGCAAGTGGCATGGAACATTATGACACTGCTTTAGCATATCCGATACAGTCTCCAGGTATCCTAGGAAACCAACCAGACATTGTCATGGACAGCTTGTCTGTGCACGGCTTGGGCCTGGTGCATCCAAAGAAGGTTTTTGATTTCTACAATGAGCTCCATGCTTACTTAGCCTCATGTGGAGTAGATGGTGTCAAGGTTGATGTGCAGAACATTATTGAGACCCTAGGTAGTGGACATGGTGGAAGGGTTTCACTCACACGCAGCTATCATCAGGCGCTTGAGGCCTCTGTTGCTCGGAATTTTCCTGACAATGGATGCATTGCCTGCATGTGTCACAACACTGATGGCCTTTATAGTTCCAAGCAGACTGCTGTTGTGAGAGCATCTGATGACTTTTACCCACATGATCCTGCTTCCCACACCATTCATATTTCATCTGTTGCTTATAACACACTTTTCCTTGGAGAGTTCATGCAACCTGACTGGGATATGTTTCATAGTTTACATCCAGCGGCAGAGTATCATGCTGCAGCTCGTGCGATCAGTGGAGGTCCAATTTATGTTAGTGATAAGCCAGGAAGGCACAATTTTGATCTTCTCAAGAGACTGGTTCTGCCTGATGGTTCAGTTCTTCGTGCTCAGTTGCCTGGCCGGCCTACTGTTGACTCTCTCTTTGTTGATCCAGCAAGAGATGGGACTAGCTTTCTCAAGATATGGAACTTGAACAAATGCTCTGGCGTGGTTGGTGTATTCAACTGCCAAGGTGCTGGTTGGTGCAAAATTCAGAAGAAAACCCGAATTCATTGTCCATCTCCTGTGACACTCACAGGCTGTGTTTGTGCCTCTGATGTGGACCTCATTGCTGAAGTAGCAGGTGATGATTGGCATGGTGACACCATTGCTTATGCCTACAGATCAGGTGAAATAATCCGGCTTCCAAAAGGTGCTTCGGTGCCCGTGACACTAAAAGTTCTAGAGTATGAACTTTTCCATTTCTGTCCAATCAAGGAAATTATGCCAAGTATTTCATTTGCACCAATAGGGCTATTGGATATGTTAAACATTGGAGGTGCTGTGGAACAGTTTGAAGTCTTTAAAGAATCTGAAGTGCCTGAAGGAGATAAATCACCAAAAGCAACTATTAGCCTCAGTGTGAGGGGAAGTGGGAGATTTGGGGTTTACTCCTCCCAGTGCCCACTGAAGTGTGTGGTAGGTGACAATGAAAGAGAGTTCAACTATGACTCAGAGAGTGGGTTGACAACCTTCTGCATCCCTGTGCCTGAAAAGGAGATGTACCGTTGGAAGATAGAGATACAAATCTGA 3828 0.4582 MGNCCARPGGPQEKKKRKEKKAKEEGAGRKLVVLREATGRDIGVRYEVGRELGRGEFGVTYLCRDRESDEELACKSISKKKLRTAIDIEDVRREVEIMRRLPKHPNVVSLKEAYEDHDAVHLVMELCEGGELFDRIVARGHYTERAAAAVTKTIVQVVQMCHKHGVMHRDLKPENFLFANKKETAPLKAIDFGLSVFFKPGERFNEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSVLDFRREPWPKVSDNAKDLVKKMLDPDPKRRLTAQEVLDHPWLQNANKAPNVSLGETVRTRLMQFSVMNKLKKRALRAIAEHLSIEEVAGIKEGFEVMDTENNGKINIDELRVGLHKLGHQIPDEDVKILMEAGDVDKDGYLDYGEFVAISIHLRKIGNDEHLHKAFQFFDQNQSGYIEIEELQKALADEIEANSEEVINAIMHDVDTDKDGRISYEEFAAMMKAGTDWRKASRQYSRESFPLPRLSFLSEGSNFNMTVTPKISVSDDGNLVVHGKTILSGVPKNILLSPGTGDGLMTGAFIGATSSNSKSLHVFPMGVLEDLRFLCCFRFKLWWMTHRVGTCGRDVPLETQFMLIECKDSKDHQHNSPTVYTVLLPLLEGQFRAVLQGNDKNEIEICLESGDPAVETNHGLHLVYMHAGTNPFEVINQAVKAVEKYMQTFLHREKKRLPSFLDWFGWCTWDAFYTDVTAEGVEEGLKSLSEGGTSPRFLIIDDGWQQIESKPKDADSVVQEGAQFATRLTGIKENTKFQKNAESNDTISGLKHVVQEAKQRHGVRHVYVWHALAGYWGGVKPAASGMEHYDTALAYPIQSPGILGNQPDIVMDSLSVHGLGLVHPKKVFDFYNELHAYLASCGVDGVKVDVQNIIETLGSGHGGRVSLTRSYHQALEASVARNFPDNGCIACMCHNTDGLYSSKQTAVVRASDDFYPHDPASHTIHISSVAYNTLFLGEFMQPDWDMFHSLHPAAEYHAAARAISGGPIYVSDKPGRHNFDLLKRLVLPDGSVLRAQLPGRPTVDSLFVDPARDGTSFLKIWNLNKCSGVVGVFNCQGAGWCKIQKKTRIHCPSPVTLTGCVCASDVDLIAEVAGDDWHGDTIAYAYRSGEIIRLPKGASVPVTLKVLEYELFHFCPIKEIMPSISFAPIGLLDMLNIGGAVEQFEVFKESEVPEGDKSPKATISLSVRGSGRFGVYSSQCPLKCVVGDNEREFNYDSESGLTTFCIPVPEKEMYRWKIEIQI 1275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00415 1275 ProSiteProfiles Protein kinase domain profile. 46 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00415 1275 Pfam Protein kinase domain 46 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00415 1275 Gene3D Aldolase class I 716 1038 IPR013785 -
Cca02g00415 1275 SUPERFAMILY Protein kinase-like (PK-like) 45 315 IPR011009 -
Cca02g00415 1275 ProSiteProfiles EF-hand calcium-binding domain profile. 455 490 IPR002048 GO:0005509
Cca02g00415 1275 MobiDBLite consensus disorder prediction 1 25 - -
Cca02g00415 1275 ProSitePatterns EF-hand calcium-binding domain. 396 408 IPR018247 -
Cca02g00415 1275 SUPERFAMILY EF-hand 328 497 IPR011992 -
Cca02g00415 1275 ProSitePatterns Protein kinases ATP-binding region signature. 52 75 IPR017441 GO:0005524
Cca02g00415 1275 CDD STKc_CAMK 45 303 - -
Cca02g00415 1275 Pfam EF-hand domain pair 422 485 IPR002048 GO:0005509
Cca02g00415 1275 PANTHER - 518 1275 IPR008811 -
Cca02g00415 1275 Pfam Raffinose synthase or seed imbibition protein Sip1 526 1257 IPR008811 -
Cca02g00415 1275 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Cca02g00415 1275 MobiDBLite consensus disorder prediction 10 25 - -
Cca02g00415 1275 ProSiteProfiles EF-hand calcium-binding domain profile. 347 382 IPR002048 GO:0005509
Cca02g00415 1275 Gene3D Transferase(Phosphotransferase) domain 1 132 312 - -
Cca02g00415 1275 SMART serkin_6 46 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00415 1275 Gene3D Phosphorylase Kinase; domain 1 48 131 - -
Cca02g00415 1275 PANTHER GALACTINOL--SUCROSE GALACTOSYLTRANSFERASE 2-RELATED 518 1275 - -
Cca02g00415 1275 ProSiteProfiles EF-hand calcium-binding domain profile. 419 454 IPR002048 GO:0005509
Cca02g00415 1275 SMART efh_1 423 451 IPR002048 GO:0005509
Cca02g00415 1275 SMART efh_1 459 487 IPR002048 GO:0005509
Cca02g00415 1275 SMART efh_1 387 415 IPR002048 GO:0005509
Cca02g00415 1275 SMART efh_1 351 379 IPR002048 GO:0005509
Cca02g00415 1275 ProSitePatterns EF-hand calcium-binding domain. 432 444 IPR018247 -
Cca02g00415 1275 CDD EFh 423 485 IPR002048 GO:0005509
Cca02g00415 1275 ProSiteProfiles EF-hand calcium-binding domain profile. 383 418 IPR002048 GO:0005509
Cca02g00415 1275 SUPERFAMILY (Trans)glycosidases 713 1043 IPR017853 -
Cca02g00415 1275 ProSitePatterns EF-hand calcium-binding domain. 468 480 IPR018247 -
Cca02g00415 1275 Gene3D - 313 487 - -
Cca02g00415 1275 Pfam EF-hand domain pair 365 410 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00415 Cca-Chr2 8696576 8713544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00415 518 1074 Glycoside Hydrolase AT3G57520 79.032 0.0 946
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Cca02g00415 Raffinose_syn 0 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00415 K06617 - gmx:100807861 1291.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00415 02 8696576 8713544 Cca02g00415 02 8696576 8713544 ECH
Cca03g01968 03 39622246 39628251 Cca02g00415 02 8696576 8713544 PCT