Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00412 ATGAATATTTTGAATGGGAGTAAGAAGGAGGGGTCCAAACCCAAGTCAAGTTCAAGTGCATCATCTAAATGGACTACAAGCTTTCTTAATACGGCATCTAACATTCGAGCTTCAGCTGAGGCTGGCGTATCAAAGTTGAGTGGTGAAATTAACCAAGCCTGGCAGACAGCAAGAGGAGCGGTTGGACAGAGCCATAATGGTGGTCAAGTGGAGCAATGTCCTCAGTGTGGTGTCAAGTTTTCCTCGGTTACTACATTGGTGGACCATGTGCAAAACTTTCATGAAAGGAGTGGCAACCGATCTGGAGCAAAGGTTACAATTGATGTTTGTCCAAAGTGTAGTAGAGGATTTCGAGATCCTGTGTCGCTTGTGGAGCATGTTGAGAGGGATCATGGTGGGAGTTCTAGAGCATAG 414 0.4565 MNILNGSKKEGSKPKSSSSASSKWTTSFLNTASNIRASAEAGVSKLSGEINQAWQTARGAVGQSHNGGQVEQCPQCGVKFSSVTTLVDHVQNFHERSGNRSGAKVTIDVCPKCSRGFRDPVSLVEHVERDHGGSSRA 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00412 137 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 137 - -
Cca02g00412 137 SMART c2h2final6 71 94 IPR013087 -
Cca02g00412 137 SMART c2h2final6 108 131 IPR013087 -
Cca02g00412 137 ProSitePatterns Zinc finger C2H2 type domain signature. 73 94 IPR013087 -
Cca02g00412 137 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 5 137 - -
Cca02g00412 137 Pfam C2H2-type zinc finger 72 94 - -
Cca02g00412 137 Gene3D Classic Zinc Finger 43 134 - -
Cca02g00412 137 Pfam Zinc finger, C2H2 type 109 131 IPR013087 -
Cca02g00412 137 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 99 IPR013087 -
Cca02g00412 137 MobiDBLite consensus disorder prediction 1 23 - -
Cca02g00412 137 ProSitePatterns Zinc finger C2H2 type domain signature. 110 131 IPR013087 -
Cca02g00412 137 ProSiteProfiles Zinc finger C2H2 type domain profile. 108 136 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00412 Cca-Chr2 8635117 8635530 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00412 39 137 C2H2 Transcription Factor Family AT2G41835 56.566 3.39e-34 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca02g00412 zf-C2H2 0.0021 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00412 - - ccaj:109801956 242.662