Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00410 ATGATGACCTTCTTGGGTTCATGCAAGAAACAATATTTTCTGGTGTATTGTTTGGAGCACAGAAGCTACATTAAACATCAGTGTACAAAAGCTGACAAGCGAGATGTCACTGTAGTTATATGTCCACTTTGCGCCAAAGGAGTTCGCCTAGTTCCTGATCAAGATCCAAACATAACTTGGGAGAATCATGTCAACACTGAGTGCGACCCATCAAACTATGAGAAAGTCACGAAGAAGAAGAAATGCCCTGTCCCTGGATGCAGAGAGATATTAGTATTCTCAAACACAATTAAGTGCAGGGACTGCACAGTAGACCATTGTTTAAAGCATCGGTATGGACCCGATCATAAATGTCCTGGTCCCAAAAATTTGCAAACTAGTTTTTCATTTATGAATATTTTGAATGGGAGTAAGGAGGGGTCCAAACCCAAGTCAAGTTCAAGTGCATCATCTAAATGGACTACAAGCTTTCTTAATACGGCATCTAACATTCGAGCTTCAGCTGAGGCTGGCGTATCAAAGTTGAGTGGTGAAGTTAACCAAGCCTGGCAGACAGCAAGAGGAGCGGTTGGACAGAGCCATAATGGTGGTCAAGTGGAGCAATGTCCTCAGTGTAGTGCCAAGTTTTCCTCGGTTACTACATTGGTGGATCATGTGCAAAATTTTCATGAAAGGAGTGGCAACCGATCTGGAGCAAAGGTTACAATTGATGTTTGTCCAAAGTGTAGTAGAGGATTTCGAGATCCTGTGTCGCTTGTGGAGCATGTTGAGAGGGATCATGGTGGGAGTTCTAGAGCATAG 801 0.432 MMTFLGSCKKQYFLVYCLEHRSYIKHQCTKADKRDVTVVICPLCAKGVRLVPDQDPNITWENHVNTECDPSNYEKVTKKKKCPVPGCREILVFSNTIKCRDCTVDHCLKHRYGPDHKCPGPKNLQTSFSFMNILNGSKEGSKPKSSSSASSKWTTSFLNTASNIRASAEAGVSKLSGEVNQAWQTARGAVGQSHNGGQVEQCPQCSAKFSSVTTLVDHVQNFHERSGNRSGAKVTIDVCPKCSRGFRDPVSLVEHVERDHGGSSRA 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00410 266 ProSitePatterns Zinc finger C2H2 type domain signature. 202 223 IPR013087 -
Cca02g00410 266 Gene3D Classic Zinc Finger 173 263 - -
Cca02g00410 266 SMART c2h2final6 200 223 IPR013087 -
Cca02g00410 266 SMART c2h2final6 237 260 IPR013087 -
Cca02g00410 266 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 10 266 - -
Cca02g00410 266 Gene3D - 67 151 IPR035896 -
Cca02g00410 266 SUPERFAMILY AN1-like Zinc finger 74 123 IPR035896 -
Cca02g00410 266 Pfam AN1-like Zinc finger 82 121 IPR000058 GO:0008270
Cca02g00410 266 ProSiteProfiles Zinc finger C2H2 type domain profile. 237 265 IPR013087 -
Cca02g00410 266 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 10 266 - -
Cca02g00410 266 ProSitePatterns Zinc finger C2H2 type domain signature. 239 260 IPR013087 -
Cca02g00410 266 ProSiteProfiles Zinc finger AN1-type profile. 76 126 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00410 Cca-Chr2 8607851 8608757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00410 2 266 C2H2 Transcription Factor Family AT2G41835 57.836 1.97e-105 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca02g00410 zf-AN1 2.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00410 - - ccaj:109801956 507.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00410 02 8607851 8608757 Cca02g00410 02 8607851 8608757 ECH