Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00404 ATGATCAGAGAGTGGCAAGAACTTTTACCAAATGATGCCGCGATAGAAGGTGATGATACCAATAACAAATCATCTATAATATCAGGAAGCATTTTTGTTGAGAATCTAAGACAAGCCGTAGACCTTGGTGCTGTTGTCAAAGCAACTCTGAATGAGTCTAATATGCTTAGCAGTGGCACTTTCAGTGCAGTTTACAAGGCATTCATGCCCTCTGGGATAGTCTTACTTGTAAGGAAACTGATATGTGTGGACATGACAATGCTGCACCTCCAAAACAAGATAATTGGAGAGCTTCAAAGGCTGAGCAAACTATGCAACGAAAATCTAATGCAACCCATTGGATATGTTATTTATAATGAAATTCTTCTTCTCATTAATCAGTATTTACCCAATGGAACATTGGCTCAGCTTCTTCATGAATCTATAAGGCAACCTGGATATCAGCCTGACTGGCCTGCTAGGCTATCTATTGCAATTGGAGTGGCAAAAGGTTTGGCTTACCTTCATGACTTGGCGATTATTCACCTTGATATTTCTTCTAGCAATGTTCTTCTGGATGCAAATTTCAAGCCGTTGATAGGGGAGGTTGAGATATCAAAACTTCTAGATCCAACCAAAGGCATTGCTAGTATTAGTGCAGTTTTTGGTTCCATTGGTTACATTCCACCAGAATATGCATATACAATGCGAGTCACAGCACCCGGAAATGTTTATAGCTTTGGTGTCATTCTGCTGGAGATCCTAACATGTCGACGACCAGTTGATGAGGTTTTTGGTGAAGGTGTGGATTTGGTGAAGTGGGTTCATGGAGCTGCAGCAAGAGGTGAAACTCCAGAGCAGATATTAGATGCAAGGTATAGCTCATTTTCCTATGGTTGGAGGAAACAAATGCTTGCTGCTCTGAAATTGGCGTTGCTATGCACTCACCATAGCCCACAAAAGCGACCAAAAATGATGAATGTAGTGGAAATGCTTCGAGAAATAGGGAATAATAACTAG 999 0.4094 MIREWQELLPNDAAIEGDDTNNKSSIISGSIFVENLRQAVDLGAVVKATLNESNMLSSGTFSAVYKAFMPSGIVLLVRKLICVDMTMLHLQNKIIGELQRLSKLCNENLMQPIGYVIYNEILLLINQYLPNGTLAQLLHESIRQPGYQPDWPARLSIAIGVAKGLAYLHDLAIIHLDISSSNVLLDANFKPLIGEVEISKLLDPTKGIASISAVFGSIGYIPPEYAYTMRVTAPGNVYSFGVILLEILTCRRPVDEVFGEGVDLVKWVHGAAARGETPEQILDARYSSFSYGWRKQMLAALKLALLCTHHSPQKRPKMMNVVEMLREIGNNN 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00404 332 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 1 328 - -
Cca02g00404 332 Pfam Protein tyrosine and serine/threonine kinase 53 324 IPR001245 GO:0004672|GO:0006468
Cca02g00404 332 Gene3D Phosphorylase Kinase; domain 1 15 128 - -
Cca02g00404 332 Gene3D Transferase(Phosphotransferase) domain 1 129 332 - -
Cca02g00404 332 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE TYROSINE-PROTEIN KINASE PXC3 1 328 - -
Cca02g00404 332 SUPERFAMILY Protein kinase-like (PK-like) 45 326 IPR011009 -
Cca02g00404 332 PIRSF ILK 30 332 - -
Cca02g00404 332 ProSiteProfiles Protein kinase domain profile. 50 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00404 332 ProSitePatterns Tyrosine protein kinases specific active-site signature. 173 185 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00404 Cca-Chr2 8498866 8502612 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00404 1 328 Receptor kinase-like Gene Family AT2G41820 64.742 2.65e-155 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca02g00404 PK_Tyr_Ser-Thr 5.3e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00404 - - gmx:100805933 475.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00404 02 8498866 8502612 Cca02g00404 02 8498866 8502612 ECH