Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00391 atggggagggggaagaTTGAGATTAAGAAAATTGAGAATTTGAACAGCAGACAGGTTACCTTCTCCAAGAGAAGAAATGGGTTGCTCAAGAAGGCCAAAGAGTTGTCTGTTCTATGTGATGCAGAGGTTGCTGTCATCATATTCTCTAGCACTGGCAAGCTTTATGAGTTTTCAAACACAAGCATGGAGCATATCCTTTCAAGGTACAGTAAAGGCGTGGAATCGGATTGTGCAGAGCAACCTCTTGGTGTGCCCCCAACACATGTATTTGAAACTGATATGGAGGGTGATACTAACCTTCTGAAGGACGAAATAACAAAGCTCCGTTCCGCGTACATAAGGATGATGGGTAAGGAGCTTGATGGATTGAGCCTTAAAGAACTGCAGCACCTAGAAAATCAACTAAGTGAAGGGATACAAGCTGTCAAAAACAAGAAGGAACAAGTACTTGTGGAACAGCTTAGGAGGTCCAGGATACAGGAGCAAAAGGCAATGCTGGAGAATGAAGTTCTGCGCAAACAACTTGAGGAGATGCAAAATAAAACAAAGACACAGTTCCTTGAATTCAGTTCTTTGGATAGGACATTTTCCAAGAATGGTTCAAAATCCCTTTTCAATTGTACTTCAGAGGAAAATGACCTTTCAGATACTTCCTTGCAGTTAGGGTTGTCAACAGATTATGGTCGCCAGAGGAAAGCATTGAAGATAGAACCTTGCAATGATTCAGGGAGTCAAGTGGCTTCACAGTGA 750 0.4107 MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDAEVAVIIFSSTGKLYEFSNTSMEHILSRYSKGVESDCAEQPLGVPPTHVFETDMEGDTNLLKDEITKLRSAYIRMMGKELDGLSLKELQHLENQLSEGIQAVKNKKEQVLVEQLRRSRIQEQKAMLENEVLRKQLEEMQNKTKTQFLEFSSLDRTFSKNGSKSLFNCTSEENDLSDTSLQLGLSTDYGRQRKALKIEPCNDSGSQVASQ 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00391 249 Pfam K-box region 94 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca02g00391 249 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 234 - -
Cca02g00391 249 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cca02g00391 249 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cca02g00391 249 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca02g00391 249 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca02g00391 249 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cca02g00391 249 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Cca02g00391 249 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cca02g00391 249 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Cca02g00391 249 ProSiteProfiles K-box domain profile. 91 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca02g00391 249 Coils Coil 125 148 - -
Cca02g00391 249 PANTHER BNAC04G24260D PROTEIN 1 234 - -
Cca02g00391 249 Coils Coil 156 181 - -
Cca02g00391 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cca02g00391 249 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00391 Cca-Chr2 8248804 8254682 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00391 1 222 MADS-box Gene Family AT3G57390 50.439 8.61e-63 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Cca02g00391 K-box 7.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00391 - - gmx:100792278 429.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00391 02 8248804 8254682 Cca02g00391 02 8248804 8254682 ECH