Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00388 ATGTCAGACATTCTCAAAAAAATTGCAGCCACAGAGAAACAGAAATTTGAAGTCAAGTTCGGTAGGAAGAGTGTTGTAAAAGCACTCAATCCTTCACCAGAGCCATTTTCAATCACTCTCTCAAATCTTGACCTGCTTTCAGGTCGTTTTCCTGTTACATACTTGTATTTCTACCACAAACCAGAATTAGCCAACTTCAAGGCATTTGTTGAAACTCTTAAAACCTCTCTAGCACAAATACTTGATCACTATTATCCCTTTGCTGGCCAAATTGTTCAGAATCCCAAAACTAGTGAGCCTGAGATCATTTGTGACAACAACGGTGCACTAGTTATTGAAGCTCACACACATGTCCCATTAAAGGATTTAGATTTCTATAATCTCAATGAAACTCTTCAAGAAAAGGTAGTCTCAGTTGAACCAGACTTTCCCTTGCAAATTCAGGTGACAGAATACACTTGTGGGGGAATTTCCATAGCATTTACTTTTGATCATGCATTAGGTGATGCTAGTTCCTTTGGTAAGTTTATTGCTTCATGGTGTGAAATAGCTCAAAATAAACCACTTTCATGCACACCAGACCATACCAGACATCTTTGTGCACGTTCTTCTCCCAAATATCACCCATCCTTTGATCAAACTTTTATGAGGTGCACCATAAAAGAGATACAGAACATGCCAATGAACCATATCTCTCTTAAACGCCTTTATCATATCGAAGCATCAAGTATCAACATGCTGCAGAAACTTGCTTCAGTGAATGGTTTCAAGAGAACAAAGATTGAGGCTTTCTCTGCATATGTATGGAAGATAATGACTGGTGCCATTGATCAAAGGCATGAAAAGTGCAAGATGGGTTGGTTGGTTGATGGAAGAGAAAGAATGGTAATAGGTAATAAGAATTGTATGTCAAATTACATTGGCAATGTCTTGTCTTTGGCTTTTGGGGAGGCAAGTATTCAAGAATTGAAGGAACGATCTATATCAGAGATTGCCAACACAGTGCATGAGGCAATTTCAAAGGTCAACAATGAGGGTCATTTTTTGGACTTGATTGATTGGATAGAGTGCCATAGGCCTGGTTTGATGCTAGCAAAGGCAGTGTTGGGTCAAGAAGGACCAGTCATAGTGGTGTCCTCAGGACAAAGGTTCCCTGTGACAGAAGTTGACTTTGGATTTGGGACTCCCTTGTTAGGGACAGTGTACACTTCCATTCAAAGGGTGGGAGTTGGTTACATGAACCAAAGGCTAAGTGCCAAGGCTGATGGTTCATGGACTGTGTCTGCCATCTTGTGGCCAGAACTTGAAGCTGCATTGCAGGATGACCCAATTTTCCAGCCCATGTCTGCATCTCATCTTCAGCTTTAG 1368 0.4079 MSDILKKIAATEKQKFEVKFGRKSVVKALNPSPEPFSITLSNLDLLSGRFPVTYLYFYHKPELANFKAFVETLKTSLAQILDHYYPFAGQIVQNPKTSEPEIICDNNGALVIEAHTHVPLKDLDFYNLNETLQEKVVSVEPDFPLQIQVTEYTCGGISIAFTFDHALGDASSFGKFIASWCEIAQNKPLSCTPDHTRHLCARSSPKYHPSFDQTFMRCTIKEIQNMPMNHISLKRLYHIEASSINMLQKLASVNGFKRTKIEAFSAYVWKIMTGAIDQRHEKCKMGWLVDGRERMVIGNKNCMSNYIGNVLSLAFGEASIQELKERSISEIANTVHEAISKVNNEGHFLDLIDWIECHRPGLMLAKAVLGQEGPVIVVSSGQRFPVTEVDFGFGTPLLGTVYTSIQRVGVGYMNQRLSAKADGSWTVSAILWPELEAALQDDPIFQPMSASHLQL 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00388 455 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 39 451 - -
Cca02g00388 455 Pfam Transferase family 17 433 - -
Cca02g00388 455 Gene3D - 218 441 IPR023213 -
Cca02g00388 455 Gene3D - 12 214 IPR023213 -
Cca02g00388 455 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 39 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00388 Cca-Chr2 8165412 8166954 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00388 41 398 Monolignol Biosynthesis Gene Families AT5G48930 25.333 1.18e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00388 - - gmx:100795616 802.357