Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00374 ATGGAAGTGGAGAAGGAAAATACCACATCGACTATTACTGAAGAACCTTCAATACCTGCCTCTGATGGTCAAGACCTTGTTTCTTCCGTTAATACATCTCTACCCCATTCCATACAACCTGTTATTCCACCAGTTATTGCACCTTCTGTTGTACCTCCTTTAGCTCCAATTCCTGCAATTCCTCCCCCTCGCCCGCTGGCACCGCTTCCGGTTCGGCCACCAGTCATTAGGCCACCTGTGCCACAAAATGGCGAGGTTGGATCAAGTGATTCTGATTCAGACAATGATGACTCAAATACGAGAATTAACAAAGGGCCTGGGGAATATGAGATATCCGAAGAGAGTAGACTGGTTAGAGAGCGGCAGGAAAAGGCAATGCAGGAACTCATGATGAAGAGGCGTGCTGCTGCTCTTGCTGTTCCTACAAATGATATGGCTGTGCGAGCTCGGCTTCGCCATCTTGGGGAGCCAATAACTCTGTTTGGTGAGAGGGAGATGGAGAGACGGGACAGGTTGCGAATGATTATGGCGAAGCTGGATGCAGAAGGTCAGCTGGAGAAGCTGATGAAAGCTCATGAGGATGAAGAGGCTGCAGCTTCTGCTCCAAAAGACGAGGCCGAGGAAGAACTGCAGTATCCTTTTTACACTGAAGGGTCAAAGGCTCTCCTGGATGCCAGAATTTATATTGCTAAATATTCTTTGGCAAGGGCAGCATTACGGATTCAACGTGCACAGAGAAGAAGGGATGATCCAGATGAAGATATGGATGCAGAGATGGATTGGGCATTGAAGCAGGCTGGGAATTTGAGTCTTGAATTCAGTGAAATTGGAGATGATCGGCCGCTTTCTGGTTGCTCCTTCTCGAGGGATGGAAAATGGCTTGCTACCTGTTCTTTGACCGGAGCTTCCAAGTTGTGGAGCATGCCCAAAATAAAAAAACATTCCACCATTAAGGGGCACACAGAGCGTGCTACTGATGTTGCTTATTCTCCTACTCACGATCATTTAGCAACTGCCTCTGCTGATCGAACAGCAAAGTATTGGAATGATCAAGGATCTCTTTTGAAGACATTTGAAGGTCATCTAGACCGTCTTGCTCGCATTGCCTTCCATCCATCAGGGAAGTACCTGGGCACTGCTAGCTTTGACAAGACATGGAGATTATGGGACATAGAAACAGGAGACGAGTTGCTTCTTCAAGAAGGCCATAGTAGAAGTGTATATGGTTTGGCTTTTCACCGTGATGGATCATTAGCTGCATCTTGTGGACTAGACGCTCTGGCTCGTGTTTGGGACCTCCGAACTGGAAGAAGTATACTTGCACTGGAAGGTCATGTCAAGCCGGTTCTCGGCGTCAGTTTTTCACCTAACGGATATCATCTAGCTACGGGTGGTGAAGACAACACTTGTCGGATTTGGGATTTGAGGAAGAAGAAATCCTTTTATACTATTCCTGCTCACGCTAATTTAATATCACAAGTTAAATTTGAGCCACAAGAAGGTTACTTTTTAGTAACTGCCTCATATGACATGACTGCTAAGGTTTGGTCAGGCCGTGACTTTAAGCCTGTGAAGACACTATCTGGGCATGAAGCAAAAGTTACTTCTGTGGATGTTCTTGCAGATGGCGGGTATATCGTTACTGCCTCCCATGATCGCACCATAAAACTGTGGTCCAGCAATACGACAAATGAACAACAAGCTATGGATGTTGACTAG 1719 0.4636 MEVEKENTTSTITEEPSIPASDGQDLVSSVNTSLPHSIQPVIPPVIAPSVVPPLAPIPAIPPPRPLAPLPVRPPVIRPPVPQNGEVGSSDSDSDNDDSNTRINKGPGEYEISEESRLVRERQEKAMQELMMKRRAAALAVPTNDMAVRARLRHLGEPITLFGEREMERRDRLRMIMAKLDAEGQLEKLMKAHEDEEAAASAPKDEAEEELQYPFYTEGSKALLDARIYIAKYSLARAALRIQRAQRRRDDPDEDMDAEMDWALKQAGNLSLEFSEIGDDRPLSGCSFSRDGKWLATCSLTGASKLWSMPKIKKHSTIKGHTERATDVAYSPTHDHLATASADRTAKYWNDQGSLLKTFEGHLDRLARIAFHPSGKYLGTASFDKTWRLWDIETGDELLLQEGHSRSVYGLAFHRDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGVSFSPNGYHLATGGEDNTCRIWDLRKKKSFYTIPAHANLISQVKFEPQEGYFLVTASYDMTAKVWSGRDFKPVKTLSGHEAKVTSVDVLADGGYIVTASHDRTIKLWSSNTTNEQQAMDVD 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00374 572 MobiDBLite consensus disorder prediction 94 116 - -
Cca02g00374 572 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 317 349 - -
Cca02g00374 572 Coils Coil 178 198 - -
Cca02g00374 572 ProSitePatterns Trp-Asp (WD) repeats signature. 419 433 IPR019775 -
Cca02g00374 572 ProSiteProfiles Trp-Asp (WD) repeats profile. 527 568 IPR001680 GO:0005515
Cca02g00374 572 MobiDBLite consensus disorder prediction 1 37 - -
Cca02g00374 572 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 358 394 - -
Cca02g00374 572 SMART WD40_4 477 517 IPR001680 GO:0005515
Cca02g00374 572 SMART WD40_4 310 349 IPR001680 GO:0005515
Cca02g00374 572 SMART WD40_4 266 307 IPR001680 GO:0005515
Cca02g00374 572 SMART WD40_4 393 432 IPR001680 GO:0005515
Cca02g00374 572 SMART WD40_4 435 474 IPR001680 GO:0005515
Cca02g00374 572 SMART WD40_4 351 390 IPR001680 GO:0005515
Cca02g00374 572 SMART WD40_4 520 559 IPR001680 GO:0005515
Cca02g00374 572 Pfam pre-mRNA processing factor 4 (PRP4) like 147 173 IPR014906 -
Cca02g00374 572 MobiDBLite consensus disorder prediction 52 116 - -
Cca02g00374 572 Gene3D - 255 441 IPR015943 GO:0005515
Cca02g00374 572 PANTHER BNAC04G01920D PROTEIN 107 565 - -
Cca02g00374 572 Gene3D - 442 571 IPR015943 GO:0005515
Cca02g00374 572 SMART pr04_2 142 195 IPR014906 -
Cca02g00374 572 ProSitePatterns Trp-Asp (WD) repeats signature. 461 475 IPR019775 -
Cca02g00374 572 PRINTS G protein beta WD-40 repeat signature 377 391 IPR020472 -
Cca02g00374 572 PRINTS G protein beta WD-40 repeat signature 461 475 IPR020472 -
Cca02g00374 572 PRINTS G protein beta WD-40 repeat signature 546 560 IPR020472 -
Cca02g00374 572 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 442 476 - -
Cca02g00374 572 ProSiteProfiles Trp-Asp (WD) repeats profile. 400 441 IPR001680 GO:0005515
Cca02g00374 572 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 400 437 - -
Cca02g00374 572 ProSiteProfiles Trp-Asp (WD) repeats profile. 358 399 IPR001680 GO:0005515
Cca02g00374 572 MobiDBLite consensus disorder prediction 10 37 - -
Cca02g00374 572 CDD WD40 281 559 - -
Cca02g00374 572 SUPERFAMILY WD40 repeat-like 272 558 IPR036322 GO:0005515
Cca02g00374 572 MobiDBLite consensus disorder prediction 52 80 - -
Cca02g00374 572 Pfam WD domain, G-beta repeat 352 390 IPR001680 GO:0005515
Cca02g00374 572 Pfam WD domain, G-beta repeat 401 432 IPR001680 GO:0005515
Cca02g00374 572 Pfam WD domain, G-beta repeat 440 474 IPR001680 GO:0005515
Cca02g00374 572 Pfam WD domain, G-beta repeat 522 559 IPR001680 GO:0005515
Cca02g00374 572 Pfam WD domain, G-beta repeat 315 349 IPR001680 GO:0005515
Cca02g00374 572 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 484 517 - -
Cca02g00374 572 Gene3D - 118 187 IPR036285 -
Cca02g00374 572 SUPERFAMILY PRP4-like 125 180 IPR036285 -
Cca02g00374 572 ProSitePatterns Trp-Asp (WD) repeats signature. 377 391 IPR019775 -
Cca02g00374 572 ProSiteProfiles Trp-Asp (WD) repeats profile. 484 526 IPR001680 GO:0005515
Cca02g00374 572 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 527 559 - -
Cca02g00374 572 ProSiteProfiles Trp-Asp (WD) repeats profile. 442 483 IPR001680 GO:0005515
Cca02g00374 572 PANTHER WD40 REPEAT PROTEIN 107 565 - -
Cca02g00374 572 ProSiteProfiles Trp-Asp (WD) repeats profile. 317 349 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00374 362 558 U-box Gene Family AT2G33340 22.624 5.91e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00374 K12662 - gmx:100788948 954.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00374 02 7891535 7898261 Cca02g00374 02 7891535 7898261 ECH