Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00372 ATGGCAAAGAGGAAGAGCTGGTTTGGATGGGTGAAAAGGCTATTCACTTCTGAATCAAAGGACAACAATAAGCCAAGGAGATGGGGGTGGAGTTTTGGAAGGATCAATCAGAAACAGTATCCTACAATCACAGCTCCAAACAGGGCATTGATTGAAGCAAGTGCAGAGCAGAGAAAGCATGCTTTGACAGTGGCTATtgctacagcagcagctgctgaggctgcagttgctgctgcacatgctgctgctgAGGTTGTCAAGCTCACAGGTGCTTCTCGTTCTTACTCATATCTTTCCAAGGGAGACAGAAGTTTAGCTGCCATCAAGATTCAAAGCGCGTATCGTGCACATCTTGCTAGGAAAGCATTGAGAGCATTGAAGGGAGTTATAAGACTGCAAGCCCTAATACGTGGTCAAGCTGTGAGACGCCAAGTGTCAAACACTCTGCAGAATTTTCACTCCAATGCAAGAAATCAGATGGAAATTTTGGAAAGAAGCAGCCATACTGCTGaaaagatcaagcaaagtccaaagcaaaagaaaaagTTAGAAGAGAAGGAACTGAAGTCTGAATGTCATAATCATAGAACATGGGATTGTAGCTTGTTTTCAAGAGAAGACATTGAAGCTATATGGTTTAGAAAACAAGAGGCCATGGTCAAAAGAGAGCGCATGAAGCAATACTCTTCTTCACAAAGGGAGAGAAAAAATCCCCAAATAATGGAAGAATGTGTACACAACATGGACTTTGAAAGAGAGAGTTGTCGTACACTTGGAGAGTGGCTACATAAAGAAACATGTGATTGGGATGTGCTTTATAAACCAACTCTTCCTTCAAACTTTCTAAAAAAGGAATTTCAAGAAGAAGGGTTAAGTCCAAAGATTTCAATTCCAAGGAAATCATTTTCTGTTGTAAAAAGAAGCTCAAATGGGGATGAGAGTTCAGTGACAAATTCTCCAGTTTTTCCCACTTACATGGCTGTTACTGAATCCAGCAAAGCAAAGATGAGGTCTATTAGCACACCAAAGCAAAGAACAGGAATTATGGATATATGCTCCAATCAGAATGAGCCTCACAAGGAAAGCATTTCCTTTTGCTCTTCTTATTATGGTGCAACTAGTAGCACCAATGCAAACAATGCAAGTTATCAACAACGACGCTAG 1164 0.3763 MAKRKSWFGWVKRLFTSESKDNNKPRRWGWSFGRINQKQYPTITAPNRALIEASAEQRKHALTVAIATAAAAEAAVAAAHAAAEVVKLTGASRSYSYLSKGDRSLAAIKIQSAYRAHLARKALRALKGVIRLQALIRGQAVRRQVSNTLQNFHSNARNQMEILERSSHTAEKIKQSPKQKKKLEEKELKSECHNHRTWDCSLFSREDIEAIWFRKQEAMVKRERMKQYSSSQRERKNPQIMEECVHNMDFERESCRTLGEWLHKETCDWDVLYKPTLPSNFLKKEFQEEGLSPKISIPRKSFSVVKRSSNGDESSVTNSPVFPTYMAVTESSKAKMRSISTPKQRTGIMDICSNQNEPHKESISFCSSYYGATSSTNANNASYQQRR 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00372 387 PANTHER IQ-DOMAIN 5-RELATED 1 379 - -
Cca02g00372 387 Gene3D - 93 152 - -
Cca02g00372 387 SMART iq_5 102 124 IPR000048 GO:0005515
Cca02g00372 387 ProSiteProfiles IQ motif profile. 127 154 IPR000048 GO:0005515
Cca02g00372 387 Pfam Protein of unknown function (DUF4005) 307 376 IPR025064 -
Cca02g00372 387 MobiDBLite consensus disorder prediction 165 186 - -
Cca02g00372 387 Pfam IQ calmodulin-binding motif 106 124 IPR000048 GO:0005515
Cca02g00372 387 ProSiteProfiles IQ motif profile. 103 131 IPR000048 GO:0005515
Cca02g00372 387 PANTHER IQ-DOMAIN 12 1 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00372 Cca-Chr2 7847105 7850683 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00372 1 377 IQD Protein Family AT5G03960 43.655 1.28e-75 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00372 - - gmx:100800767 586.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00372 02 7847105 7850683 Cca02g00372 02 7847105 7850683 ECH